miRNA display CGI


Results 21 - 24 of 24 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22249 3' -58.1 NC_005045.1 + 23467 0.73 0.173706
Target:  5'- gGGGCCGGcugaGCGGGUGCUUGCggaaCAaCGGg -3'
miRNA:   3'- -CCCGGCC----UGUCCAUGAGCGa---GUcGUC- -5'
22249 3' -58.1 NC_005045.1 + 4883 0.76 0.114699
Target:  5'- aGGCUGGACAGG----CGCUCGGCGGu -3'
miRNA:   3'- cCCGGCCUGUCCaugaGCGAGUCGUC- -5'
22249 3' -58.1 NC_005045.1 + 15978 0.8 0.059396
Target:  5'- aGGCCGGACgaAGGU-CUCgGCUUAGCAGg -3'
miRNA:   3'- cCCGGCCUG--UCCAuGAG-CGAGUCGUC- -5'
22249 3' -58.1 NC_005045.1 + 11775 1.11 0.000249
Target:  5'- cGGGCCGGACAGGUACUCGCUCAGCAGg -3'
miRNA:   3'- -CCCGGCCUGUCCAUGAGCGAGUCGUC- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.