miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2225 3' -58.2 NC_001405.1 + 27205 0.66 0.429407
Target:  5'- ---gUGcUgGCGCcGGGuGUGGCCGCUg -3'
miRNA:   3'- uaagACaAgCGCGuUCC-CGCCGGCGG- -5'
2225 3' -58.2 NC_001405.1 + 5523 0.66 0.429407
Target:  5'- --gCUGcgCGC-CAAGGGCcacGCCGCg -3'
miRNA:   3'- uaaGACaaGCGcGUUCCCGc--CGGCGg -5'
2225 3' -58.2 NC_001405.1 + 17342 0.66 0.419699
Target:  5'- gGUUUUGgaCGCgGCcgcaGCGGCCGCCu -3'
miRNA:   3'- -UAAGACaaGCG-CGuuccCGCCGGCGG- -5'
2225 3' -58.2 NC_001405.1 + 16252 0.66 0.410124
Target:  5'- -------cCGCGCGuuGGGCGGCaguGCCg -3'
miRNA:   3'- uaagacaaGCGCGUu-CCCGCCGg--CGG- -5'
2225 3' -58.2 NC_001405.1 + 16490 0.66 0.39139
Target:  5'- -aUCUagUUGCGCgGGGGGCGGgUGCg -3'
miRNA:   3'- uaAGAcaAGCGCG-UUCCCGCCgGCGg -5'
2225 3' -58.2 NC_001405.1 + 6155 0.67 0.382234
Target:  5'- --cCUGgccCGCGgugaugccuuUGAGGGUGGCCGCg -3'
miRNA:   3'- uaaGACaa-GCGC----------GUUCCCGCCGGCGg -5'
2225 3' -58.2 NC_001405.1 + 15984 0.67 0.373222
Target:  5'- --cCUGgggCGCGCAcaaacGCGGCCGCa -3'
miRNA:   3'- uaaGACaa-GCGCGUucc--CGCCGGCGg -5'
2225 3' -58.2 NC_001405.1 + 6470 0.67 0.347063
Target:  5'- ----cGUUgGUccaGCAGaGGCGGCCGCCc -3'
miRNA:   3'- uaagaCAAgCG---CGUUcCCGCCGGCGG- -5'
2225 3' -58.2 NC_001405.1 + 13839 0.67 0.33864
Target:  5'- gGUUCUuUUCGCGCu---GCGGCUGCa -3'
miRNA:   3'- -UAAGAcAAGCGCGuuccCGCCGGCGg -5'
2225 3' -58.2 NC_001405.1 + 3644 0.69 0.276646
Target:  5'- ----aGUUgGCGCucauGGcGGCGGCUGCUg -3'
miRNA:   3'- uaagaCAAgCGCGu---UC-CCGCCGGCGG- -5'
2225 3' -58.2 NC_001405.1 + 11551 0.69 0.268868
Target:  5'- -gUCUGcUCGUacGCGguuaccaGGucGGCGGCCGCCa -3'
miRNA:   3'- uaAGACaAGCG--CGU-------UC--CCGCCGGCGG- -5'
2225 3' -58.2 NC_001405.1 + 22736 0.69 0.255849
Target:  5'- --cCUGUguaucgcaacUCGCGCGcgcAGGGCGGagGCCc -3'
miRNA:   3'- uaaGACA----------AGCGCGU---UCCCGCCggCGG- -5'
2225 3' -58.2 NC_001405.1 + 23924 0.69 0.249207
Target:  5'- uUUUUGggggCGCGCGGGgaGGCGGCgGCa -3'
miRNA:   3'- uAAGACaa--GCGCGUUC--CCGCCGgCGg -5'
2225 3' -58.2 NC_001405.1 + 9505 0.7 0.242708
Target:  5'- ----cGUUCuCGCGGGGGCGcaguuggaagacGCCGCCc -3'
miRNA:   3'- uaagaCAAGcGCGUUCCCGC------------CGGCGG- -5'
2225 3' -58.2 NC_001405.1 + 15277 0.7 0.236351
Target:  5'- -cUCggGUUgCGCaGCGGGGGCGGCagcuucuGCCg -3'
miRNA:   3'- uaAGa-CAA-GCG-CGUUCCCGCCGg------CGG- -5'
2225 3' -58.2 NC_001405.1 + 22093 0.71 0.200547
Target:  5'- -------gCGUGCAGGGGCccaacucGGCCGCCu -3'
miRNA:   3'- uaagacaaGCGCGUUCCCG-------CCGGCGG- -5'
2225 3' -58.2 NC_001405.1 + 11466 0.73 0.140119
Target:  5'- ----cGcgCGCGCAcacGuGGCGGCCGCCg -3'
miRNA:   3'- uaagaCaaGCGCGUu--C-CCGCCGGCGG- -5'
2225 3' -58.2 NC_001405.1 + 6546 1.09 0.000248
Target:  5'- cAUUCUGUUCGCGCAAGGGCGGCCGCCu -3'
miRNA:   3'- -UAAGACAAGCGCGUUCCCGCCGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.