miRNA display CGI


Results 21 - 28 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22250 3' -57.3 NC_005045.1 + 4822 0.66 0.485585
Target:  5'- cGCCGaGCGcCugUCCAgccucgUCGCCG-GAGAc -3'
miRNA:   3'- cCGGC-CGU-GugAGGU------AGCGGCuCUUU- -5'
22250 3' -57.3 NC_005045.1 + 4513 0.66 0.485585
Target:  5'- cGGgUGGCGCAUggUCC-UCGCCGAcaaGggGa -3'
miRNA:   3'- -CCgGCCGUGUG--AGGuAGCGGCU---CuuU- -5'
22250 3' -57.3 NC_005045.1 + 28675 0.66 0.500186
Target:  5'- aGCaGGCGCACUCCAUCcaggcucaggcuaagGCCGGc--- -3'
miRNA:   3'- cCGgCCGUGUGAGGUAG---------------CGGCUcuuu -5'
22250 3' -57.3 NC_005045.1 + 13221 0.66 0.505448
Target:  5'- gGGCCGGauggcaaCugGCgCCAguacCGCCGGGGAu -3'
miRNA:   3'- -CCGGCC-------GugUGaGGUa---GCGGCUCUUu -5'
22250 3' -57.3 NC_005045.1 + 3733 0.66 0.506503
Target:  5'- aGGCCgGGCAgauaGCgaCCAcgcCGCCGAGGAAc -3'
miRNA:   3'- -CCGG-CCGUg---UGa-GGUa--GCGGCUCUUU- -5'
22250 3' -57.3 NC_005045.1 + 13780 0.66 0.517106
Target:  5'- uGGCaUGGCGCugUCCcau-CCGAGGGAa -3'
miRNA:   3'- -CCG-GCCGUGugAGGuagcGGCUCUUU- -5'
22250 3' -57.3 NC_005045.1 + 5836 0.66 0.527796
Target:  5'- cGUCGGCGCGCUUCG-CGUCGGc--- -3'
miRNA:   3'- cCGGCCGUGUGAGGUaGCGGCUcuuu -5'
22250 3' -57.3 NC_005045.1 + 20808 0.65 0.535329
Target:  5'- cGGUCGGCgagacguggugcgaGCAgUCCGcuugcgcCGCCGAGAc- -3'
miRNA:   3'- -CCGGCCG--------------UGUgAGGUa------GCGGCUCUuu -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.