miRNA display CGI


Results 1 - 6 of 6 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22251 3' -56.8 NC_005045.1 + 12105 1.07 0.000658
Target:  5'- aUCUUCGUACGGCACCCGGCCCUUGUAc -3'
miRNA:   3'- -AGAAGCAUGCCGUGGGCCGGGAACAU- -5'
22251 3' -56.8 NC_005045.1 + 24416 0.72 0.248985
Target:  5'- cUCUUCac-CGGCACgaCGGCCCUUGg- -3'
miRNA:   3'- -AGAAGcauGCCGUGg-GCCGGGAACau -5'
22251 3' -56.8 NC_005045.1 + 4779 0.68 0.408839
Target:  5'- gUCUUCG-ACGGUGgCCGGCUuCUUGa- -3'
miRNA:   3'- -AGAAGCaUGCCGUgGGCCGG-GAACau -5'
22251 3' -56.8 NC_005045.1 + 31724 0.68 0.437756
Target:  5'- --aUCGUAgCGGaccaggaaCugCCGGCCCUUGa- -3'
miRNA:   3'- agaAGCAU-GCC--------GugGGCCGGGAACau -5'
22251 3' -56.8 NC_005045.1 + 40348 0.67 0.445664
Target:  5'- gUCUUCGUccuuuuggGCGGCccuugcgacgcuCCCGGCCCa---- -3'
miRNA:   3'- -AGAAGCA--------UGCCGu-----------GGGCCGGGaacau -5'
22251 3' -56.8 NC_005045.1 + 5666 0.66 0.530863
Target:  5'- uUCUugggCGUAUaGGCgugggcgaauGCCCGGCUCUUGg- -3'
miRNA:   3'- -AGAa---GCAUG-CCG----------UGGGCCGGGAACau -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.