Results 1 - 13 of 13 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
22252 | 3' | -56.4 | NC_005045.1 | + | 13578 | 0.66 | 0.615366 |
Target: 5'- aGCCcuuguugACCUCgGcGGCGGUGUccuuguggcAGUCGGu -3' miRNA: 3'- gUGG-------UGGAGgUcCCGCCAUA---------UCAGCC- -5' |
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22252 | 3' | -56.4 | NC_005045.1 | + | 20287 | 0.66 | 0.583455 |
Target: 5'- gCugCGCaggCCAGGGCGGUc-AGUCc- -3' miRNA: 3'- -GugGUGga-GGUCCCGCCAuaUCAGcc -5' |
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22252 | 3' | -56.4 | NC_005045.1 | + | 5708 | 0.67 | 0.561635 |
Target: 5'- aCGCCG-CUCaCAcGGGCGGUGUaAGUCc- -3' miRNA: 3'- -GUGGUgGAG-GU-CCCGCCAUA-UCAGcc -5' |
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22252 | 3' | -56.4 | NC_005045.1 | + | 21528 | 0.67 | 0.550806 |
Target: 5'- gCGCCACgUUCucGGCGGUGaGGUCa- -3' miRNA: 3'- -GUGGUGgAGGucCCGCCAUaUCAGcc -5' |
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22252 | 3' | -56.4 | NC_005045.1 | + | 16745 | 0.67 | 0.518738 |
Target: 5'- gACCucGCCuaUCgAGGGCugGGUGUGGUCGc -3' miRNA: 3'- gUGG--UGG--AGgUCCCG--CCAUAUCAGCc -5' |
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22252 | 3' | -56.4 | NC_005045.1 | + | 40616 | 0.67 | 0.518738 |
Target: 5'- uCACUGCCuUCCAGGGCGacaaGGcCGGc -3' miRNA: 3'- -GUGGUGG-AGGUCCCGCcauaUCaGCC- -5' |
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22252 | 3' | -56.4 | NC_005045.1 | + | 18596 | 0.7 | 0.372542 |
Target: 5'- aACCGCUUCaCAGGGCGGgg----CGGc -3' miRNA: 3'- gUGGUGGAG-GUCCCGCCauaucaGCC- -5' |
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22252 | 3' | -56.4 | NC_005045.1 | + | 17988 | 0.71 | 0.338547 |
Target: 5'- cCGCCugUUCCAGGGUGGc--GGcgCGGu -3' miRNA: 3'- -GUGGugGAGGUCCCGCCauaUCa-GCC- -5' |
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22252 | 3' | -56.4 | NC_005045.1 | + | 4833 | 0.71 | 0.3061 |
Target: 5'- gACCucggucaGCUuggCCAGGGCGGUGUGGU-GGa -3' miRNA: 3'- gUGG-------UGGa--GGUCCCGCCAUAUCAgCC- -5' |
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22252 | 3' | -56.4 | NC_005045.1 | + | 9876 | 0.72 | 0.291891 |
Target: 5'- gGCCGCCUUCGGGGuCGGgccAGUUGu -3' miRNA: 3'- gUGGUGGAGGUCCC-GCCauaUCAGCc -5' |
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22252 | 3' | -56.4 | NC_005045.1 | + | 27888 | 0.74 | 0.197454 |
Target: 5'- uGCCcgagGCCguggUCGGGGCGGUguauGUGGUCGGc -3' miRNA: 3'- gUGG----UGGa---GGUCCCGCCA----UAUCAGCC- -5' |
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22252 | 3' | -56.4 | NC_005045.1 | + | 17388 | 0.74 | 0.197454 |
Target: 5'- uCGCCGCaCUUCGGGcaGCGG-AUGGUCGGc -3' miRNA: 3'- -GUGGUG-GAGGUCC--CGCCaUAUCAGCC- -5' |
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22252 | 3' | -56.4 | NC_005045.1 | + | 12852 | 1.09 | 0.000592 |
Target: 5'- uCACCACCUCCAGGGCGGUAUAGUCGGu -3' miRNA: 3'- -GUGGUGGAGGUCCCGCCAUAUCAGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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