miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22252 3' -56.4 NC_005045.1 + 13578 0.66 0.615366
Target:  5'- aGCCcuuguugACCUCgGcGGCGGUGUccuuguggcAGUCGGu -3'
miRNA:   3'- gUGG-------UGGAGgUcCCGCCAUA---------UCAGCC- -5'
22252 3' -56.4 NC_005045.1 + 20287 0.66 0.583455
Target:  5'- gCugCGCaggCCAGGGCGGUc-AGUCc- -3'
miRNA:   3'- -GugGUGga-GGUCCCGCCAuaUCAGcc -5'
22252 3' -56.4 NC_005045.1 + 5708 0.67 0.561635
Target:  5'- aCGCCG-CUCaCAcGGGCGGUGUaAGUCc- -3'
miRNA:   3'- -GUGGUgGAG-GU-CCCGCCAUA-UCAGcc -5'
22252 3' -56.4 NC_005045.1 + 21528 0.67 0.550806
Target:  5'- gCGCCACgUUCucGGCGGUGaGGUCa- -3'
miRNA:   3'- -GUGGUGgAGGucCCGCCAUaUCAGcc -5'
22252 3' -56.4 NC_005045.1 + 16745 0.67 0.518738
Target:  5'- gACCucGCCuaUCgAGGGCugGGUGUGGUCGc -3'
miRNA:   3'- gUGG--UGG--AGgUCCCG--CCAUAUCAGCc -5'
22252 3' -56.4 NC_005045.1 + 40616 0.67 0.518738
Target:  5'- uCACUGCCuUCCAGGGCGacaaGGcCGGc -3'
miRNA:   3'- -GUGGUGG-AGGUCCCGCcauaUCaGCC- -5'
22252 3' -56.4 NC_005045.1 + 18596 0.7 0.372542
Target:  5'- aACCGCUUCaCAGGGCGGgg----CGGc -3'
miRNA:   3'- gUGGUGGAG-GUCCCGCCauaucaGCC- -5'
22252 3' -56.4 NC_005045.1 + 17988 0.71 0.338547
Target:  5'- cCGCCugUUCCAGGGUGGc--GGcgCGGu -3'
miRNA:   3'- -GUGGugGAGGUCCCGCCauaUCa-GCC- -5'
22252 3' -56.4 NC_005045.1 + 4833 0.71 0.3061
Target:  5'- gACCucggucaGCUuggCCAGGGCGGUGUGGU-GGa -3'
miRNA:   3'- gUGG-------UGGa--GGUCCCGCCAUAUCAgCC- -5'
22252 3' -56.4 NC_005045.1 + 9876 0.72 0.291891
Target:  5'- gGCCGCCUUCGGGGuCGGgccAGUUGu -3'
miRNA:   3'- gUGGUGGAGGUCCC-GCCauaUCAGCc -5'
22252 3' -56.4 NC_005045.1 + 27888 0.74 0.197454
Target:  5'- uGCCcgagGCCguggUCGGGGCGGUguauGUGGUCGGc -3'
miRNA:   3'- gUGG----UGGa---GGUCCCGCCA----UAUCAGCC- -5'
22252 3' -56.4 NC_005045.1 + 17388 0.74 0.197454
Target:  5'- uCGCCGCaCUUCGGGcaGCGG-AUGGUCGGc -3'
miRNA:   3'- -GUGGUG-GAGGUCC--CGCCaUAUCAGCC- -5'
22252 3' -56.4 NC_005045.1 + 12852 1.09 0.000592
Target:  5'- uCACCACCUCCAGGGCGGUAUAGUCGGu -3'
miRNA:   3'- -GUGGUGGAGGUCCCGCCAUAUCAGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.