miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22252 5' -59.2 NC_005045.1 + 17324 0.66 0.477335
Target:  5'- aUCCG-CUGC-CCGAAGUGcggcGACACGg -3'
miRNA:   3'- aGGGCaGGCGcGGCUUCGCu---CUGUGC- -5'
22252 5' -59.2 NC_005045.1 + 19491 0.66 0.467432
Target:  5'- aCCCGgauaguucUCCGgGCCuucGGCGAgGGCGCGc -3'
miRNA:   3'- aGGGC--------AGGCgCGGcu-UCGCU-CUGUGC- -5'
22252 5' -59.2 NC_005045.1 + 39570 0.66 0.467432
Target:  5'- aCCUGcCgGCGCUGAuGGCugGAGGCugGg -3'
miRNA:   3'- aGGGCaGgCGCGGCU-UCG--CUCUGugC- -5'
22252 5' -59.2 NC_005045.1 + 32783 0.66 0.447951
Target:  5'- aCCCGgugaCCGUGCuccaCGAAGCGGucCACGc -3'
miRNA:   3'- aGGGCa---GGCGCG----GCUUCGCUcuGUGC- -5'
22252 5' -59.2 NC_005045.1 + 22540 0.66 0.447951
Target:  5'- -gCCGUCCGUGCUuacGAGCGuGGCGa- -3'
miRNA:   3'- agGGCAGGCGCGGc--UUCGCuCUGUgc -5'
22252 5' -59.2 NC_005045.1 + 32427 0.67 0.401311
Target:  5'- gUCCCGUauuagcgcCCGCGUgGAgcaGGCcGAGAUACc -3'
miRNA:   3'- -AGGGCA--------GGCGCGgCU---UCG-CUCUGUGc -5'
22252 5' -59.2 NC_005045.1 + 10207 0.67 0.398612
Target:  5'- -gCCGUCCagggcagggaagcgGCGcCCGcuGCGGGACACc -3'
miRNA:   3'- agGGCAGG--------------CGC-GGCuuCGCUCUGUGc -5'
22252 5' -59.2 NC_005045.1 + 11392 0.67 0.392359
Target:  5'- cUUCCGcagCCGgGCCGAAGcCGaAGACcCGa -3'
miRNA:   3'- -AGGGCa--GGCgCGGCUUC-GC-UCUGuGC- -5'
22252 5' -59.2 NC_005045.1 + 21705 0.67 0.383539
Target:  5'- aUCCCauGUCCGguaGCCGggGUGucguAGaACACGa -3'
miRNA:   3'- -AGGG--CAGGCg--CGGCuuCGC----UC-UGUGC- -5'
22252 5' -59.2 NC_005045.1 + 19712 0.68 0.333446
Target:  5'- -aCCGagcgCCugGCGCgGAAgGCGAGGCGCGg -3'
miRNA:   3'- agGGCa---GG--CGCGgCUU-CGCUCUGUGC- -5'
22252 5' -59.2 NC_005045.1 + 25747 0.69 0.31785
Target:  5'- aUCCCGUCCGCugaacacccagGCC-AAGCGuagcuucagccGGugGCGg -3'
miRNA:   3'- -AGGGCAGGCG-----------CGGcUUCGC-----------UCugUGC- -5'
22252 5' -59.2 NC_005045.1 + 21848 0.69 0.31785
Target:  5'- aUCCG-CCGCgagGCCGAcAGcCGGGACACa -3'
miRNA:   3'- aGGGCaGGCG---CGGCU-UC-GCUCUGUGc -5'
22252 5' -59.2 NC_005045.1 + 41291 0.69 0.302808
Target:  5'- gCCUGaUCCGCGCUGuAGCGgccuaucaGGACGCc -3'
miRNA:   3'- aGGGC-AGGCGCGGCuUCGC--------UCUGUGc -5'
22252 5' -59.2 NC_005045.1 + 31786 0.7 0.281283
Target:  5'- cCUCGUCgGaCGCUGggGCGAuGCGCu -3'
miRNA:   3'- aGGGCAGgC-GCGGCuuCGCUcUGUGc -5'
22252 5' -59.2 NC_005045.1 + 4559 0.71 0.229839
Target:  5'- aCCCGUCguUGCGCagcacGGUGGGACGCGg -3'
miRNA:   3'- aGGGCAG--GCGCGgcu--UCGCUCUGUGC- -5'
22252 5' -59.2 NC_005045.1 + 12814 1.09 0.000333
Target:  5'- aUCCCGUCCGCGCCGAAGCGAGACACGa -3'
miRNA:   3'- -AGGGCAGGCGCGGCUUCGCUCUGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.