Results 1 - 16 of 16 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
22252 | 5' | -59.2 | NC_005045.1 | + | 17324 | 0.66 | 0.477335 |
Target: 5'- aUCCG-CUGC-CCGAAGUGcggcGACACGg -3' miRNA: 3'- aGGGCaGGCGcGGCUUCGCu---CUGUGC- -5' |
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22252 | 5' | -59.2 | NC_005045.1 | + | 39570 | 0.66 | 0.467432 |
Target: 5'- aCCUGcCgGCGCUGAuGGCugGAGGCugGg -3' miRNA: 3'- aGGGCaGgCGCGGCU-UCG--CUCUGugC- -5' |
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22252 | 5' | -59.2 | NC_005045.1 | + | 19491 | 0.66 | 0.467432 |
Target: 5'- aCCCGgauaguucUCCGgGCCuucGGCGAgGGCGCGc -3' miRNA: 3'- aGGGC--------AGGCgCGGcu-UCGCU-CUGUGC- -5' |
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22252 | 5' | -59.2 | NC_005045.1 | + | 22540 | 0.66 | 0.447951 |
Target: 5'- -gCCGUCCGUGCUuacGAGCGuGGCGa- -3' miRNA: 3'- agGGCAGGCGCGGc--UUCGCuCUGUgc -5' |
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22252 | 5' | -59.2 | NC_005045.1 | + | 32783 | 0.66 | 0.447951 |
Target: 5'- aCCCGgugaCCGUGCuccaCGAAGCGGucCACGc -3' miRNA: 3'- aGGGCa---GGCGCG----GCUUCGCUcuGUGC- -5' |
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22252 | 5' | -59.2 | NC_005045.1 | + | 32427 | 0.67 | 0.401311 |
Target: 5'- gUCCCGUauuagcgcCCGCGUgGAgcaGGCcGAGAUACc -3' miRNA: 3'- -AGGGCA--------GGCGCGgCU---UCG-CUCUGUGc -5' |
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22252 | 5' | -59.2 | NC_005045.1 | + | 10207 | 0.67 | 0.398612 |
Target: 5'- -gCCGUCCagggcagggaagcgGCGcCCGcuGCGGGACACc -3' miRNA: 3'- agGGCAGG--------------CGC-GGCuuCGCUCUGUGc -5' |
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22252 | 5' | -59.2 | NC_005045.1 | + | 11392 | 0.67 | 0.392359 |
Target: 5'- cUUCCGcagCCGgGCCGAAGcCGaAGACcCGa -3' miRNA: 3'- -AGGGCa--GGCgCGGCUUC-GC-UCUGuGC- -5' |
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22252 | 5' | -59.2 | NC_005045.1 | + | 21705 | 0.67 | 0.383539 |
Target: 5'- aUCCCauGUCCGguaGCCGggGUGucguAGaACACGa -3' miRNA: 3'- -AGGG--CAGGCg--CGGCuuCGC----UC-UGUGC- -5' |
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22252 | 5' | -59.2 | NC_005045.1 | + | 19712 | 0.68 | 0.333446 |
Target: 5'- -aCCGagcgCCugGCGCgGAAgGCGAGGCGCGg -3' miRNA: 3'- agGGCa---GG--CGCGgCUU-CGCUCUGUGC- -5' |
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22252 | 5' | -59.2 | NC_005045.1 | + | 25747 | 0.69 | 0.31785 |
Target: 5'- aUCCCGUCCGCugaacacccagGCC-AAGCGuagcuucagccGGugGCGg -3' miRNA: 3'- -AGGGCAGGCG-----------CGGcUUCGC-----------UCugUGC- -5' |
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22252 | 5' | -59.2 | NC_005045.1 | + | 21848 | 0.69 | 0.31785 |
Target: 5'- aUCCG-CCGCgagGCCGAcAGcCGGGACACa -3' miRNA: 3'- aGGGCaGGCG---CGGCU-UC-GCUCUGUGc -5' |
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22252 | 5' | -59.2 | NC_005045.1 | + | 41291 | 0.69 | 0.302808 |
Target: 5'- gCCUGaUCCGCGCUGuAGCGgccuaucaGGACGCc -3' miRNA: 3'- aGGGC-AGGCGCGGCuUCGC--------UCUGUGc -5' |
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22252 | 5' | -59.2 | NC_005045.1 | + | 31786 | 0.7 | 0.281283 |
Target: 5'- cCUCGUCgGaCGCUGggGCGAuGCGCu -3' miRNA: 3'- aGGGCAGgC-GCGGCuuCGCUcUGUGc -5' |
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22252 | 5' | -59.2 | NC_005045.1 | + | 4559 | 0.71 | 0.229839 |
Target: 5'- aCCCGUCguUGCGCagcacGGUGGGACGCGg -3' miRNA: 3'- aGGGCAG--GCGCGgcu--UCGCUCUGUGC- -5' |
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22252 | 5' | -59.2 | NC_005045.1 | + | 12814 | 1.09 | 0.000333 |
Target: 5'- aUCCCGUCCGCGCCGAAGCGAGACACGa -3' miRNA: 3'- -AGGGCAGGCGCGGCUUCGCUCUGUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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