Results 1 - 10 of 10 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
22253 | 3' | -59.3 | NC_005045.1 | + | 27344 | 0.66 | 0.421748 |
Target: 5'- aUGGGCCUgcaugagauggcccCgucgccgUCCACGG-ACAGCCa-- -3' miRNA: 3'- -ACCCGGA--------------Ga------AGGUGCCaUGUCGGcca -5' |
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22253 | 3' | -59.3 | NC_005045.1 | + | 34474 | 0.66 | 0.405864 |
Target: 5'- gGGGCCgagCUggugcUCaCGCGGcACGuuGCCGGUg -3' miRNA: 3'- aCCCGGa--GA-----AG-GUGCCaUGU--CGGCCA- -5' |
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22253 | 3' | -59.3 | NC_005045.1 | + | 31285 | 0.66 | 0.387666 |
Target: 5'- --uGCCUCUaUCCugGGauUGGCCGGUa -3' miRNA: 3'- accCGGAGA-AGGugCCauGUCGGCCA- -5' |
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22253 | 3' | -59.3 | NC_005045.1 | + | 26163 | 0.67 | 0.352917 |
Target: 5'- cGGGCCg---CCACGGU--GGCCGa- -3' miRNA: 3'- aCCCGGagaaGGUGCCAugUCGGCca -5' |
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22253 | 3' | -59.3 | NC_005045.1 | + | 12865 | 0.67 | 0.347067 |
Target: 5'- aGGGCCgccaacaucaccaccUCCaggGCGGUAUAGUCGGUc -3' miRNA: 3'- aCCCGGaga------------AGG---UGCCAUGUCGGCCA- -5' |
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22253 | 3' | -59.3 | NC_005045.1 | + | 17987 | 0.67 | 0.344581 |
Target: 5'- --cGCCUgUUCCAgGGUgGCGGCgCGGUa -3' miRNA: 3'- accCGGAgAAGGUgCCA-UGUCG-GCCA- -5' |
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22253 | 3' | -59.3 | NC_005045.1 | + | 14962 | 0.67 | 0.336388 |
Target: 5'- gGGaGCCgUCUgaggcacugCCuGCGGgACAGCCGGUa -3' miRNA: 3'- aCC-CGG-AGAa--------GG-UGCCaUGUCGGCCA- -5' |
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22253 | 3' | -59.3 | NC_005045.1 | + | 1430 | 0.68 | 0.319648 |
Target: 5'- gGGaaGCCUCcccgUCCACGGUuaaGCAaaggcacguuaguGCCGGUg -3' miRNA: 3'- aCC--CGGAGa---AGGUGCCA---UGU-------------CGGCCA- -5' |
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22253 | 3' | -59.3 | NC_005045.1 | + | 29536 | 0.7 | 0.242844 |
Target: 5'- -cGGCCUCUUCCA-GGcugaGCuGCCGGg -3' miRNA: 3'- acCCGGAGAAGGUgCCa---UGuCGGCCa -5' |
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22253 | 3' | -59.3 | NC_005045.1 | + | 13124 | 1.07 | 0.000358 |
Target: 5'- cUGGGCCUCUUCCACGGUACAGCCGGUg -3' miRNA: 3'- -ACCCGGAGAAGGUGCCAUGUCGGCCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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