miRNA display CGI

Results 1 - 10 of 10 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
22253	3'	-59.3	NC_005045.1	+	27344	0.66	0.421748
	Target:  5'- aUGGGCCUgcaugagauggcccCgucgccgUCCACGG-ACAGCCa-- -3' miRNA:   3'- -ACCCGGA--------------Ga------AGGUGCCaUGUCGGcca -5'
22253	3'	-59.3	NC_005045.1	+	34474	0.66	0.405864
	Target:  5'- gGGGCCgagCUggugcUCaCGCGGcACGuuGCCGGUg -3' miRNA:   3'- aCCCGGa--GA-----AG-GUGCCaUGU--CGGCCA- -5'
22253	3'	-59.3	NC_005045.1	+	31285	0.66	0.387666
	Target:  5'- --uGCCUCUaUCCugGGauUGGCCGGUa -3' miRNA:   3'- accCGGAGA-AGGugCCauGUCGGCCA- -5'
22253	3'	-59.3	NC_005045.1	+	26163	0.67	0.352917
	Target:  5'- cGGGCCg---CCACGGU--GGCCGa- -3' miRNA:   3'- aCCCGGagaaGGUGCCAugUCGGCca -5'
22253	3'	-59.3	NC_005045.1	+	12865	0.67	0.347067
	Target:  5'- aGGGCCgccaacaucaccaccUCCaggGCGGUAUAGUCGGUc -3' miRNA:   3'- aCCCGGaga------------AGG---UGCCAUGUCGGCCA- -5'
22253	3'	-59.3	NC_005045.1	+	17987	0.67	0.344581
	Target:  5'- --cGCCUgUUCCAgGGUgGCGGCgCGGUa -3' miRNA:   3'- accCGGAgAAGGUgCCA-UGUCG-GCCA- -5'
22253	3'	-59.3	NC_005045.1	+	14962	0.67	0.336388
	Target:  5'- gGGaGCCgUCUgaggcacugCCuGCGGgACAGCCGGUa -3' miRNA:   3'- aCC-CGG-AGAa--------GG-UGCCaUGUCGGCCA- -5'
22253	3'	-59.3	NC_005045.1	+	1430	0.68	0.319648
	Target:  5'- gGGaaGCCUCcccgUCCACGGUuaaGCAaaggcacguuaguGCCGGUg -3' miRNA:   3'- aCC--CGGAGa---AGGUGCCA---UGU-------------CGGCCA- -5'
22253	3'	-59.3	NC_005045.1	+	29536	0.7	0.242844
	Target:  5'- -cGGCCUCUUCCA-GGcugaGCuGCCGGg -3' miRNA:   3'- acCCGGAGAAGGUgCCa---UGuCGGCCa -5'
22253	3'	-59.3	NC_005045.1	+	13124	1.07	0.000358
	Target:  5'- cUGGGCCUCUUCCACGGUACAGCCGGUg -3' miRNA:   3'- -ACCCGGAGAAGGUGCCAUGUCGGCCA- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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