Results 1 - 15 of 15 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
22255 | 3' | -51.4 | NC_005045.1 | + | 24719 | 0.67 | 0.805984 |
Target: 5'- gGGCGAUGCGGUcuacUCCGAgGGccuGAc- -3' miRNA: 3'- -CCGCUACGUCGu---AGGUUgCCuu-CUac -5' |
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22255 | 3' | -51.4 | NC_005045.1 | + | 25503 | 0.67 | 0.795888 |
Target: 5'- aGGuUGAUGCGGC--CCGugGGGucAGGUGu -3' miRNA: 3'- -CC-GCUACGUCGuaGGUugCCU--UCUAC- -5' |
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22255 | 3' | -51.4 | NC_005045.1 | + | 28580 | 0.67 | 0.785603 |
Target: 5'- cGuCGAUGCGGUggcccuggauAUCgAGCGGGAGGUc -3' miRNA: 3'- cC-GCUACGUCG----------UAGgUUGCCUUCUAc -5' |
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22255 | 3' | -51.4 | NC_005045.1 | + | 16953 | 0.67 | 0.775143 |
Target: 5'- aGCaGGUGCAGguCGUCCAGCGGGGc--- -3' miRNA: 3'- cCG-CUACGUC--GUAGGUUGCCUUcuac -5' |
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22255 | 3' | -51.4 | NC_005045.1 | + | 29162 | 0.67 | 0.767723 |
Target: 5'- aGGCGGacuucagccugaagaUGCAGCGauucaucgCCAAcaagggcCGGGAGAUGa -3' miRNA: 3'- -CCGCU---------------ACGUCGUa-------GGUU-------GCCUUCUAC- -5' |
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22255 | 3' | -51.4 | NC_005045.1 | + | 17070 | 0.68 | 0.753746 |
Target: 5'- cGCGGcgGCGGCAUCUuguucaGGAAGAa- -3' miRNA: 3'- cCGCUa-CGUCGUAGGuug---CCUUCUac -5' |
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22255 | 3' | -51.4 | NC_005045.1 | + | 27453 | 0.68 | 0.742835 |
Target: 5'- aGGCG--GCGGCcUCCAGCGGcuaccuGGUGu -3' miRNA: 3'- -CCGCuaCGUCGuAGGUUGCCuu----CUAC- -5' |
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22255 | 3' | -51.4 | NC_005045.1 | + | 38431 | 0.68 | 0.709416 |
Target: 5'- cGGuCGAUGUugauGGUGUCgGACGGAucgcAGGUGa -3' miRNA: 3'- -CC-GCUACG----UCGUAGgUUGCCU----UCUAC- -5' |
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22255 | 3' | -51.4 | NC_005045.1 | + | 38373 | 0.69 | 0.686697 |
Target: 5'- uGGUGGcgGCAGCGauaUCCGAUGcGggGAUc -3' miRNA: 3'- -CCGCUa-CGUCGU---AGGUUGC-CuuCUAc -5' |
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22255 | 3' | -51.4 | NC_005045.1 | + | 15057 | 0.69 | 0.652216 |
Target: 5'- cGGCGGUGCcGCAggUCUAAugcgccugcuauCGGAAGAg- -3' miRNA: 3'- -CCGCUACGuCGU--AGGUU------------GCCUUCUac -5' |
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22255 | 3' | -51.4 | NC_005045.1 | + | 29729 | 0.7 | 0.629106 |
Target: 5'- gGGcCGAUGCAGacuUCCAACaGcGGGUGg -3' miRNA: 3'- -CC-GCUACGUCgu-AGGUUGcCuUCUAC- -5' |
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22255 | 3' | -51.4 | NC_005045.1 | + | 7267 | 0.7 | 0.617549 |
Target: 5'- aGGCGGgcUGCGGCcUuuGugGGAGGAa- -3' miRNA: 3'- -CCGCU--ACGUCGuAggUugCCUUCUac -5' |
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22255 | 3' | -51.4 | NC_005045.1 | + | 11847 | 0.73 | 0.440859 |
Target: 5'- cGGCGAUGgAGUGUgCCGGCcuGAAGGUGg -3' miRNA: 3'- -CCGCUACgUCGUA-GGUUGc-CUUCUAC- -5' |
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22255 | 3' | -51.4 | NC_005045.1 | + | 36100 | 0.73 | 0.427695 |
Target: 5'- aGGUGAUGCAGCGguUCCAGuaaccacgccagcuCGGAucGAUGu -3' miRNA: 3'- -CCGCUACGUCGU--AGGUU--------------GCCUu-CUAC- -5' |
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22255 | 3' | -51.4 | NC_005045.1 | + | 13483 | 1.1 | 0.001437 |
Target: 5'- gGGCGAUGCAGCAUCCAACGGAAGAUGc -3' miRNA: 3'- -CCGCUACGUCGUAGGUUGCCUUCUAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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