miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22257 3' -54.3 NC_005045.1 + 40109 0.66 0.733085
Target:  5'- aCcgGaUCGAUGcCCUUGagggCCUUGUCCg -3'
miRNA:   3'- aGuaC-AGCUACcGGAGCa---GGAGCAGG- -5'
22257 3' -54.3 NC_005045.1 + 30587 0.66 0.732015
Target:  5'- ---gGUCGcUGGCCagccaguUCG-CCUCGUCg -3'
miRNA:   3'- aguaCAGCuACCGG-------AGCaGGAGCAGg -5'
22257 3' -54.3 NC_005045.1 + 12778 0.66 0.700589
Target:  5'- uUCAcG-CGGcugccGGCUuccgggUCGUCCUCGUCCu -3'
miRNA:   3'- -AGUaCaGCUa----CCGG------AGCAGGAGCAGG- -5'
22257 3' -54.3 NC_005045.1 + 24528 0.67 0.678563
Target:  5'- gCAUGUCGAaggauUGGguccaCUCGUCCUgGUg- -3'
miRNA:   3'- aGUACAGCU-----ACCg----GAGCAGGAgCAgg -5'
22257 3' -54.3 NC_005045.1 + 35329 0.67 0.667476
Target:  5'- ---cGUCGAUGGCCaucuugCGgaugCCUuCGUCa -3'
miRNA:   3'- aguaCAGCUACCGGa-----GCa---GGA-GCAGg -5'
22257 3' -54.3 NC_005045.1 + 15578 0.67 0.645211
Target:  5'- cUUGUGUCGGaucggaugaUGGCCUUaUCCUucauggcguaggCGUCCa -3'
miRNA:   3'- -AGUACAGCU---------ACCGGAGcAGGA------------GCAGG- -5'
22257 3' -54.3 NC_005045.1 + 28179 0.68 0.611748
Target:  5'- aCggGUCGAuaUGGCCaCGUCCaaGUUCg -3'
miRNA:   3'- aGuaCAGCU--ACCGGaGCAGGagCAGG- -5'
22257 3' -54.3 NC_005045.1 + 28447 0.68 0.611748
Target:  5'- uUCA-GUCGA--GCCUUGUUCUCGgCCu -3'
miRNA:   3'- -AGUaCAGCUacCGGAGCAGGAGCaGG- -5'
22257 3' -54.3 NC_005045.1 + 27352 0.7 0.49221
Target:  5'- gCAUGa-GAUGGCCcCGUCgC-CGUCCa -3'
miRNA:   3'- aGUACagCUACCGGaGCAG-GaGCAGG- -5'
22257 3' -54.3 NC_005045.1 + 10101 0.72 0.393696
Target:  5'- uUCuUGaUGAUGGCCUCGacggCCUUGUCg -3'
miRNA:   3'- -AGuACaGCUACCGGAGCa---GGAGCAGg -5'
22257 3' -54.3 NC_005045.1 + 14148 0.73 0.324674
Target:  5'- aCAUGUCGAUGGUugcgguCUCGgcagCCUUGUUg -3'
miRNA:   3'- aGUACAGCUACCG------GAGCa---GGAGCAGg -5'
22257 3' -54.3 NC_005045.1 + 35159 0.74 0.308888
Target:  5'- gCGUGcUUGGcgUGGCCUCGcUCCUCGcauUCCa -3'
miRNA:   3'- aGUAC-AGCU--ACCGGAGC-AGGAGC---AGG- -5'
22257 3' -54.3 NC_005045.1 + 41546 0.76 0.213496
Target:  5'- aUCAcagCGGUGGCCUUGgccuugaaucggCCUCGUCCa -3'
miRNA:   3'- -AGUacaGCUACCGGAGCa-----------GGAGCAGG- -5'
22257 3' -54.3 NC_005045.1 + 15856 1.13 0.000511
Target:  5'- aUCAUGUCGAUGGCCUCGUCCUCGUCCg -3'
miRNA:   3'- -AGUACAGCUACCGGAGCAGGAGCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.