miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22258 3' -54.7 NC_005045.1 + 42283 0.65 0.67754
Target:  5'- aUGA-GcCGAUGGGCagccacgccaCCGCAGGGUu -3'
miRNA:   3'- -ACUaCaGCUACCCGaac-------GGCGUCUCG- -5'
22258 3' -54.7 NC_005045.1 + 220 0.65 0.67754
Target:  5'- aUGA-GcCGAUGGGCagccacgccaCCGCAGGGUu -3'
miRNA:   3'- -ACUaCaGCUACCCGaac-------GGCGUCUCG- -5'
22258 3' -54.7 NC_005045.1 + 40632 0.66 0.668523
Target:  5'- cUGggGUCaaGAUGGGCgacaaaGCCacacCGGAGCa -3'
miRNA:   3'- -ACuaCAG--CUACCCGaa----CGGc---GUCUCG- -5'
22258 3' -54.7 NC_005045.1 + 39736 0.66 0.623211
Target:  5'- gGAUGUac--GGGCcaagcgUGCCGCccAGGGCa -3'
miRNA:   3'- aCUACAgcuaCCCGa-----ACGGCG--UCUCG- -5'
22258 3' -54.7 NC_005045.1 + 30274 0.67 0.60056
Target:  5'- aGAUGaaGAUGGGCaUUGCCcCGGcccaGGCc -3'
miRNA:   3'- aCUACagCUACCCG-AACGGcGUC----UCG- -5'
22258 3' -54.7 NC_005045.1 + 23277 0.68 0.555678
Target:  5'- ---gGUCaGGUGGGUgcGCCGCAGcaacuGGCc -3'
miRNA:   3'- acuaCAG-CUACCCGaaCGGCGUC-----UCG- -5'
22258 3' -54.7 NC_005045.1 + 16141 0.68 0.53359
Target:  5'- gUGAUGgaucacgaccaCGAgacGGGCUUGgUGCGGGGUg -3'
miRNA:   3'- -ACUACa----------GCUa--CCCGAACgGCGUCUCG- -5'
22258 3' -54.7 NC_005045.1 + 32254 0.69 0.469463
Target:  5'- cUGggGUCuGGUgcGGGacgcaUUGCCGCAGAGg -3'
miRNA:   3'- -ACuaCAG-CUA--CCCg----AACGGCGUCUCg -5'
22258 3' -54.7 NC_005045.1 + 40021 0.69 0.469463
Target:  5'- aGAUcaGaCGGUGGcGCUgcaugauggGCCGCAGGGUg -3'
miRNA:   3'- aCUA--CaGCUACC-CGAa--------CGGCGUCUCG- -5'
22258 3' -54.7 NC_005045.1 + 26281 0.7 0.39061
Target:  5'- uUGAUGUCGGUGcGGUcgGCCuCGG-GCu -3'
miRNA:   3'- -ACUACAGCUAC-CCGaaCGGcGUCuCG- -5'
22258 3' -54.7 NC_005045.1 + 32162 0.77 0.159367
Target:  5'- gGuAUGUUGcUGGGCUggaUGCCGCAGGGg -3'
miRNA:   3'- aC-UACAGCuACCCGA---ACGGCGUCUCg -5'
22258 3' -54.7 NC_005045.1 + 15816 0.78 0.123247
Target:  5'- gGAUGUCGAa-GGCcgucuucaUGCCGCAGAGCu -3'
miRNA:   3'- aCUACAGCUacCCGa-------ACGGCGUCUCG- -5'
22258 3' -54.7 NC_005045.1 + 16166 1.12 0.000412
Target:  5'- cUGAUGUCGAUGGGCUUGCCGCAGAGCg -3'
miRNA:   3'- -ACUACAGCUACCCGAACGGCGUCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.