Results 1 - 20 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22259 | 3' | -59.1 | NC_005045.1 | + | 2912 | 0.67 | 0.402427 |
Target: 5'- gUCGGcugcguugcAGCGGCC-CGCCgGGUCCUUGGg -3' miRNA: 3'- -GGUC---------UCGCUGGuGUGGgUCGGGAGCU- -5' |
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22259 | 3' | -59.1 | NC_005045.1 | + | 4440 | 0.69 | 0.295741 |
Target: 5'- aCCAGuGUG-CCGCGCUUAG-CCUCGGg -3' miRNA: 3'- -GGUCuCGCuGGUGUGGGUCgGGAGCU- -5' |
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22259 | 3' | -59.1 | NC_005045.1 | + | 5054 | 0.77 | 0.088298 |
Target: 5'- cCCAGGGCGAguaaggcCCGCacguaauagGCCCGGCCCUCc- -3' miRNA: 3'- -GGUCUCGCU-------GGUG---------UGGGUCGGGAGcu -5' |
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22259 | 3' | -59.1 | NC_005045.1 | + | 5651 | 0.66 | 0.469128 |
Target: 5'- gCguGGGCGA--AUGCCCGGCUCUUGGc -3' miRNA: 3'- -GguCUCGCUggUGUGGGUCGGGAGCU- -5' |
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22259 | 3' | -59.1 | NC_005045.1 | + | 6740 | 0.67 | 0.393398 |
Target: 5'- gCCAGAG-GaACCACugCCaccAGUUCUCGGc -3' miRNA: 3'- -GGUCUCgC-UGGUGugGG---UCGGGAGCU- -5' |
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22259 | 3' | -59.1 | NC_005045.1 | + | 6824 | 0.7 | 0.260986 |
Target: 5'- -gGGAgGCGugCugGCCCucgguGCCUUCGAc -3' miRNA: 3'- ggUCU-CGCugGugUGGGu----CGGGAGCU- -5' |
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22259 | 3' | -59.1 | NC_005045.1 | + | 8614 | 0.68 | 0.33399 |
Target: 5'- -aAGGGCcuCCACGCCgGGgCCUCGGu -3' miRNA: 3'- ggUCUCGcuGGUGUGGgUCgGGAGCU- -5' |
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22259 | 3' | -59.1 | NC_005045.1 | + | 8881 | 0.66 | 0.434086 |
Target: 5'- uCCAGGGCGAgaaucucacccacggUCAUACCCAggGCCgC-CGAg -3' miRNA: 3'- -GGUCUCGCU---------------GGUGUGGGU--CGG-GaGCU- -5' |
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22259 | 3' | -59.1 | NC_005045.1 | + | 10138 | 0.66 | 0.439822 |
Target: 5'- --cGGGCG-CCGCuuCCCuGCCCUgGAc -3' miRNA: 3'- gguCUCGCuGGUGu-GGGuCGGGAgCU- -5' |
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22259 | 3' | -59.1 | NC_005045.1 | + | 10731 | 0.72 | 0.201519 |
Target: 5'- gCCuGAGCGAggagCACAUCCAGCuCCUCa- -3' miRNA: 3'- -GGuCUCGCUg---GUGUGGGUCG-GGAGcu -5' |
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22259 | 3' | -59.1 | NC_005045.1 | + | 11095 | 0.68 | 0.367113 |
Target: 5'- aCCAGGGCGcagauACUAUcccCCCAGCCCaaGGg -3' miRNA: 3'- -GGUCUCGC-----UGGUGu--GGGUCGGGagCU- -5' |
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22259 | 3' | -59.1 | NC_005045.1 | + | 11586 | 0.69 | 0.288512 |
Target: 5'- aUCAGAcGUGGCUGUACCCGGCaCUCGAc -3' miRNA: 3'- -GGUCU-CGCUGGUGUGGGUCGgGAGCU- -5' |
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22259 | 3' | -59.1 | NC_005045.1 | + | 12116 | 0.67 | 0.402427 |
Target: 5'- uCCAuc-CGGCCaucuucguacgGCACCCGGCCCUUGu -3' miRNA: 3'- -GGUcucGCUGG-----------UGUGGGUCGGGAGCu -5' |
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22259 | 3' | -59.1 | NC_005045.1 | + | 12433 | 0.67 | 0.411587 |
Target: 5'- uUCAGcaccAGCGGCgACGCCCucaaGGCUCUgGAg -3' miRNA: 3'- -GGUC----UCGCUGgUGUGGG----UCGGGAgCU- -5' |
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22259 | 3' | -59.1 | NC_005045.1 | + | 16823 | 1.1 | 0.000291 |
Target: 5'- uCCAGAGCGACCACACCCAGCCCUCGAu -3' miRNA: 3'- -GGUCUCGCUGGUGUGGGUCGGGAGCU- -5' |
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22259 | 3' | -59.1 | NC_005045.1 | + | 17431 | 0.68 | 0.350274 |
Target: 5'- gCCGGucuGCGuauGCACCCAGCCUUCc- -3' miRNA: 3'- -GGUCu--CGCuggUGUGGGUCGGGAGcu -5' |
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22259 | 3' | -59.1 | NC_005045.1 | + | 18275 | 0.66 | 0.469128 |
Target: 5'- gCCGGAGCu-UgGCugCCGGCCC-CGc -3' miRNA: 3'- -GGUCUCGcuGgUGugGGUCGGGaGCu -5' |
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22259 | 3' | -59.1 | NC_005045.1 | + | 25019 | 0.72 | 0.196268 |
Target: 5'- aCAGGGCGAUCugGCGCUCGGaCuCCUCGGc -3' miRNA: 3'- gGUCUCGCUGG--UGUGGGUC-G-GGAGCU- -5' |
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22259 | 3' | -59.1 | NC_005045.1 | + | 27695 | 0.72 | 0.201519 |
Target: 5'- cCCAGGGCGAUCu--CCUGGCCCUUc- -3' miRNA: 3'- -GGUCUCGCUGGuguGGGUCGGGAGcu -5' |
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22259 | 3' | -59.1 | NC_005045.1 | + | 29055 | 0.67 | 0.402427 |
Target: 5'- gCCAGcgaucuGCuGACCgGCACCCAggauGCCgUCGAg -3' miRNA: 3'- -GGUCu-----CG-CUGG-UGUGGGU----CGGgAGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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