Results 1 - 18 of 18 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
22260 | 3' | -66.5 | NC_005045.1 | + | 10402 | 0.66 | 0.1781 |
Target: 5'- cGCCaUGGUCCGCAGCCucauGGaagauuGCCgGCGg -3' miRNA: 3'- uCGGaGCCGGGCGUCGG----CC------UGGgCGU- -5' |
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22260 | 3' | -66.5 | NC_005045.1 | + | 11384 | 0.66 | 0.16912 |
Target: 5'- gAGCaUCGcuUCCGCAGCCGGGCCgaaGCc -3' miRNA: 3'- -UCGgAGCc-GGGCGUCGGCCUGGg--CGu -5' |
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22260 | 3' | -66.5 | NC_005045.1 | + | 9984 | 0.67 | 0.148815 |
Target: 5'- cGGCCUUGGCUCGCAuuuucucgcaucguuCCGGcagacgugaGCCUGCAc -3' miRNA: 3'- -UCGGAGCCGGGCGUc--------------GGCC---------UGGGCGU- -5' |
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22260 | 3' | -66.5 | NC_005045.1 | + | 23115 | 0.67 | 0.148424 |
Target: 5'- cGGCCUgGGCCugCGCGGCCugcuGACgCUGCu -3' miRNA: 3'- -UCGGAgCCGG--GCGUCGGc---CUG-GGCGu -5' |
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22260 | 3' | -66.5 | NC_005045.1 | + | 10775 | 0.68 | 0.126648 |
Target: 5'- aGGCCgguggCGGCCaCGguGCCGGAaCCa-- -3' miRNA: 3'- -UCGGa----GCCGG-GCguCGGCCUgGGcgu -5' |
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22260 | 3' | -66.5 | NC_005045.1 | + | 22414 | 0.68 | 0.120071 |
Target: 5'- gAGaaaCUCGGCCUGUacgAGCUGGAgUCGCu -3' miRNA: 3'- -UCg--GAGCCGGGCG---UCGGCCUgGGCGu -5' |
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22260 | 3' | -66.5 | NC_005045.1 | + | 6241 | 0.69 | 0.113814 |
Target: 5'- gAGCCUCGGCCUcaGCcuucgccacggaAGCgCGGAagguauaCCGCAc -3' miRNA: 3'- -UCGGAGCCGGG--CG------------UCG-GCCUg------GGCGU- -5' |
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22260 | 3' | -66.5 | NC_005045.1 | + | 26223 | 0.69 | 0.107862 |
Target: 5'- cGGCCaccguggCGGCCCGUAGCU--GCCUGUAa -3' miRNA: 3'- -UCGGa------GCCGGGCGUCGGccUGGGCGU- -5' |
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22260 | 3' | -66.5 | NC_005045.1 | + | 14264 | 0.69 | 0.104997 |
Target: 5'- gGGCgaCGugaaCCCGCAgGCCGGuaACCCGCAa -3' miRNA: 3'- -UCGgaGCc---GGGCGU-CGGCC--UGGGCGU- -5' |
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22260 | 3' | -66.5 | NC_005045.1 | + | 5823 | 0.69 | 0.104997 |
Target: 5'- cGCgUCGGCCUGgcacaAGCUGGccgcuACCCGCGc -3' miRNA: 3'- uCGgAGCCGGGCg----UCGGCC-----UGGGCGU- -5' |
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22260 | 3' | -66.5 | NC_005045.1 | + | 26048 | 0.69 | 0.104151 |
Target: 5'- cGGCCUCGGCCagggcuggucgguaUGCAGCagguGGGCCaucaGCu -3' miRNA: 3'- -UCGGAGCCGG--------------GCGUCGg---CCUGGg---CGu -5' |
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22260 | 3' | -66.5 | NC_005045.1 | + | 11783 | 0.69 | 0.102203 |
Target: 5'- aAGCUUCaGGCCCGUGGCauguGGGCUgGCu -3' miRNA: 3'- -UCGGAG-CCGGGCGUCGg---CCUGGgCGu -5' |
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22260 | 3' | -66.5 | NC_005045.1 | + | 30632 | 0.7 | 0.093982 |
Target: 5'- gGGCUucgCGGCCCGUgucGCUGGugagcagACCCGCAu -3' miRNA: 3'- -UCGGa--GCCGGGCGu--CGGCC-------UGGGCGU- -5' |
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22260 | 3' | -66.5 | NC_005045.1 | + | 30021 | 0.7 | 0.084527 |
Target: 5'- cGCCUCGuGCaggguaCGCAGCUcGGCCUGCGc -3' miRNA: 3'- uCGGAGC-CGg-----GCGUCGGcCUGGGCGU- -5' |
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22260 | 3' | -66.5 | NC_005045.1 | + | 15351 | 0.72 | 0.057381 |
Target: 5'- cGCCUUGGCCCcaccuGCuGCCgugagguGGACCCGUg -3' miRNA: 3'- uCGGAGCCGGG-----CGuCGG-------CCUGGGCGu -5' |
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22260 | 3' | -66.5 | NC_005045.1 | + | 39289 | 0.73 | 0.051361 |
Target: 5'- gGGCCUCGacggcaCCCGUGGCUGGgcggcugACCCGCAg -3' miRNA: 3'- -UCGGAGCc-----GGGCGUCGGCC-------UGGGCGU- -5' |
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22260 | 3' | -66.5 | NC_005045.1 | + | 4061 | 0.74 | 0.04482 |
Target: 5'- uGCCUCGGCCUGCuGGCaGGcGCCUGCu -3' miRNA: 3'- uCGGAGCCGGGCG-UCGgCC-UGGGCGu -5' |
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22260 | 3' | -66.5 | NC_005045.1 | + | 20157 | 1.07 | 8.7e-05 |
Target: 5'- cAGCCUCGGCCCGCAGCCGGACCCGCAc -3' miRNA: 3'- -UCGGAGCCGGGCGUCGGCCUGGGCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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