miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22261 5' -62.9 NC_005045.1 + 18895 0.66 0.303643
Target:  5'- gGCCCaggugGCggaGCUgCGC-CUGCCGUgCCCGc -3'
miRNA:   3'- -CGGG-----CGa--CGAgGUGcGACGGCA-GGGC- -5'
22261 5' -62.9 NC_005045.1 + 31569 0.66 0.303643
Target:  5'- cUCCGCUGUUgCgGCGCUGUaccaauCGcCCCGa -3'
miRNA:   3'- cGGGCGACGA-GgUGCGACG------GCaGGGC- -5'
22261 5' -62.9 NC_005045.1 + 32791 0.66 0.296418
Target:  5'- -aCCG-UGCUCCACGaaGCgGUCCaCGc -3'
miRNA:   3'- cgGGCgACGAGGUGCgaCGgCAGG-GC- -5'
22261 5' -62.9 NC_005045.1 + 3100 0.66 0.296418
Target:  5'- -aCCGCaaagGCUgUGCGaaugGCCGUCCCa -3'
miRNA:   3'- cgGGCGa---CGAgGUGCga--CGGCAGGGc -5'
22261 5' -62.9 NC_005045.1 + 31735 0.67 0.249564
Target:  5'- gGCCCGCUGC--CACGUU-CCGUucUCCGa -3'
miRNA:   3'- -CGGGCGACGagGUGCGAcGGCA--GGGC- -5'
22261 5' -62.9 NC_005045.1 + 26591 0.67 0.249564
Target:  5'- aGCCgGCUaugGUUgCCGCGUUGgCGUCCgGg -3'
miRNA:   3'- -CGGgCGA---CGA-GGUGCGACgGCAGGgC- -5'
22261 5' -62.9 NC_005045.1 + 10948 0.67 0.249564
Target:  5'- uGCCUGCUGgcagauaUCCACGaacccuugacCUGCUGUucCCCGg -3'
miRNA:   3'- -CGGGCGACg------AGGUGC----------GACGGCA--GGGC- -5'
22261 5' -62.9 NC_005045.1 + 22270 0.67 0.245231
Target:  5'- uGCCCuucuugcGCUGUacguggguguacaggUCCACGCUGCCcgaaCCGg -3'
miRNA:   3'- -CGGG-------CGACG---------------AGGUGCGACGGcag-GGC- -5'
22261 5' -62.9 NC_005045.1 + 10185 0.67 0.233784
Target:  5'- cGCCCGCUGCgggacaCCACGCcaUGCgcaccgacgauggcaCGgcaCCCGu -3'
miRNA:   3'- -CGGGCGACGa-----GGUGCG--ACG---------------GCa--GGGC- -5'
22261 5' -62.9 NC_005045.1 + 23390 0.69 0.183615
Target:  5'- aCCCGUUGUUCCGCaagcacccGCUcaGCCGgcCCCGg -3'
miRNA:   3'- cGGGCGACGAGGUG--------CGA--CGGCa-GGGC- -5'
22261 5' -62.9 NC_005045.1 + 14873 0.69 0.183615
Target:  5'- cGCCC-CUGCUgUAC-CgGCUGUCCCGc -3'
miRNA:   3'- -CGGGcGACGAgGUGcGaCGGCAGGGC- -5'
22261 5' -62.9 NC_005045.1 + 18328 0.7 0.148659
Target:  5'- aGCCCGCaGCgCCAUGaCUGCgagGUCCUGg -3'
miRNA:   3'- -CGGGCGaCGaGGUGC-GACGg--CAGGGC- -5'
22261 5' -62.9 NC_005045.1 + 15004 0.75 0.061762
Target:  5'- gGCCCcggugGCgGCUCC-CGCUGCCGucgaagUCCCGg -3'
miRNA:   3'- -CGGG-----CGaCGAGGuGCGACGGC------AGGGC- -5'
22261 5' -62.9 NC_005045.1 + 13903 0.77 0.042819
Target:  5'- uGCUgGCcaccagUGCUgCCGCGCUGCCGUCCgGg -3'
miRNA:   3'- -CGGgCG------ACGA-GGUGCGACGGCAGGgC- -5'
22261 5' -62.9 NC_005045.1 + 21705 1.09 0.000138
Target:  5'- aGCCCGCUGCUCCACGCUGCCGUCCCGc -3'
miRNA:   3'- -CGGGCGACGAGGUGCGACGGCAGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.