Results 1 - 15 of 15 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
22261 | 5' | -62.9 | NC_005045.1 | + | 31569 | 0.66 | 0.303643 |
Target: 5'- cUCCGCUGUUgCgGCGCUGUaccaauCGcCCCGa -3' miRNA: 3'- cGGGCGACGA-GgUGCGACG------GCaGGGC- -5' |
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22261 | 5' | -62.9 | NC_005045.1 | + | 18895 | 0.66 | 0.303643 |
Target: 5'- gGCCCaggugGCggaGCUgCGC-CUGCCGUgCCCGc -3' miRNA: 3'- -CGGG-----CGa--CGAgGUGcGACGGCA-GGGC- -5' |
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22261 | 5' | -62.9 | NC_005045.1 | + | 32791 | 0.66 | 0.296418 |
Target: 5'- -aCCG-UGCUCCACGaaGCgGUCCaCGc -3' miRNA: 3'- cgGGCgACGAGGUGCgaCGgCAGG-GC- -5' |
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22261 | 5' | -62.9 | NC_005045.1 | + | 3100 | 0.66 | 0.296418 |
Target: 5'- -aCCGCaaagGCUgUGCGaaugGCCGUCCCa -3' miRNA: 3'- cgGGCGa---CGAgGUGCga--CGGCAGGGc -5' |
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22261 | 5' | -62.9 | NC_005045.1 | + | 10948 | 0.67 | 0.249564 |
Target: 5'- uGCCUGCUGgcagauaUCCACGaacccuugacCUGCUGUucCCCGg -3' miRNA: 3'- -CGGGCGACg------AGGUGC----------GACGGCA--GGGC- -5' |
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22261 | 5' | -62.9 | NC_005045.1 | + | 31735 | 0.67 | 0.249564 |
Target: 5'- gGCCCGCUGC--CACGUU-CCGUucUCCGa -3' miRNA: 3'- -CGGGCGACGagGUGCGAcGGCA--GGGC- -5' |
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22261 | 5' | -62.9 | NC_005045.1 | + | 26591 | 0.67 | 0.249564 |
Target: 5'- aGCCgGCUaugGUUgCCGCGUUGgCGUCCgGg -3' miRNA: 3'- -CGGgCGA---CGA-GGUGCGACgGCAGGgC- -5' |
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22261 | 5' | -62.9 | NC_005045.1 | + | 22270 | 0.67 | 0.245231 |
Target: 5'- uGCCCuucuugcGCUGUacguggguguacaggUCCACGCUGCCcgaaCCGg -3' miRNA: 3'- -CGGG-------CGACG---------------AGGUGCGACGGcag-GGC- -5' |
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22261 | 5' | -62.9 | NC_005045.1 | + | 10185 | 0.67 | 0.233784 |
Target: 5'- cGCCCGCUGCgggacaCCACGCcaUGCgcaccgacgauggcaCGgcaCCCGu -3' miRNA: 3'- -CGGGCGACGa-----GGUGCG--ACG---------------GCa--GGGC- -5' |
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22261 | 5' | -62.9 | NC_005045.1 | + | 23390 | 0.69 | 0.183615 |
Target: 5'- aCCCGUUGUUCCGCaagcacccGCUcaGCCGgcCCCGg -3' miRNA: 3'- cGGGCGACGAGGUG--------CGA--CGGCa-GGGC- -5' |
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22261 | 5' | -62.9 | NC_005045.1 | + | 14873 | 0.69 | 0.183615 |
Target: 5'- cGCCC-CUGCUgUAC-CgGCUGUCCCGc -3' miRNA: 3'- -CGGGcGACGAgGUGcGaCGGCAGGGC- -5' |
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22261 | 5' | -62.9 | NC_005045.1 | + | 18328 | 0.7 | 0.148659 |
Target: 5'- aGCCCGCaGCgCCAUGaCUGCgagGUCCUGg -3' miRNA: 3'- -CGGGCGaCGaGGUGC-GACGg--CAGGGC- -5' |
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22261 | 5' | -62.9 | NC_005045.1 | + | 15004 | 0.75 | 0.061762 |
Target: 5'- gGCCCcggugGCgGCUCC-CGCUGCCGucgaagUCCCGg -3' miRNA: 3'- -CGGG-----CGaCGAGGuGCGACGGC------AGGGC- -5' |
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22261 | 5' | -62.9 | NC_005045.1 | + | 13903 | 0.77 | 0.042819 |
Target: 5'- uGCUgGCcaccagUGCUgCCGCGCUGCCGUCCgGg -3' miRNA: 3'- -CGGgCG------ACGA-GGUGCGACGGCAGGgC- -5' |
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22261 | 5' | -62.9 | NC_005045.1 | + | 21705 | 1.09 | 0.000138 |
Target: 5'- aGCCCGCUGCUCCACGCUGCCGUCCCGc -3' miRNA: 3'- -CGGGCGACGAGGUGCGACGGCAGGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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