miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22262 5' -57.1 NC_005045.1 + 25011 0.66 0.533405
Target:  5'- uGGCGCCGGUccAGGCcaagcugugGGAAGacaacgagaaauucUCGUGg- -3'
miRNA:   3'- -CCGCGGCCG--UCUGa--------CCUUC--------------AGCACaa -5'
22262 5' -57.1 NC_005045.1 + 33433 0.66 0.504601
Target:  5'- aGGCGCCGuGCgcccucuccGGGCUGGGccaggaGGUCGg--- -3'
miRNA:   3'- -CCGCGGC-CG---------UCUGACCU------UCAGCacaa -5'
22262 5' -57.1 NC_005045.1 + 18273 0.66 0.494102
Target:  5'- uGGCGCU-GCGGGCUGGGcuGUCGa--- -3'
miRNA:   3'- -CCGCGGcCGUCUGACCUu-CAGCacaa -5'
22262 5' -57.1 NC_005045.1 + 37153 0.66 0.494102
Target:  5'- cGGUGCUGGUGGAUgaGGAAcugCGUGUg -3'
miRNA:   3'- -CCGCGGCCGUCUGa-CCUUca-GCACAa -5'
22262 5' -57.1 NC_005045.1 + 32132 0.67 0.463232
Target:  5'- uGGCugcuGCUGGCGGcGCUGGGcaAGUCGgGUa -3'
miRNA:   3'- -CCG----CGGCCGUC-UGACCU--UCAGCaCAa -5'
22262 5' -57.1 NC_005045.1 + 5349 0.68 0.42371
Target:  5'- cGCGCuCGGCGGcCUGGAGccGUCGg--- -3'
miRNA:   3'- cCGCG-GCCGUCuGACCUU--CAGCacaa -5'
22262 5' -57.1 NC_005045.1 + 41822 0.68 0.39543
Target:  5'- uGGUGCCGGCgaAGGCgcGGAGGUCu---- -3'
miRNA:   3'- -CCGCGGCCG--UCUGa-CCUUCAGcacaa -5'
22262 5' -57.1 NC_005045.1 + 24360 0.7 0.318245
Target:  5'- cGUGCCGGUgaAGAgCUGGAgcgcagccgAGUCGUGa- -3'
miRNA:   3'- cCGCGGCCG--UCU-GACCU---------UCAGCACaa -5'
22262 5' -57.1 NC_005045.1 + 17410 0.7 0.310403
Target:  5'- cGGCGgcugCGGCGG-CUGGA-GUCGUGg- -3'
miRNA:   3'- -CCGCg---GCCGUCuGACCUuCAGCACaa -5'
22262 5' -57.1 NC_005045.1 + 19468 0.71 0.252948
Target:  5'- cGGCGagGGCGcGCUGGAAGUCGUc-- -3'
miRNA:   3'- -CCGCggCCGUcUGACCUUCAGCAcaa -5'
22262 5' -57.1 NC_005045.1 + 8336 0.72 0.21815
Target:  5'- uGGacaaGCCGGUAGACccggacucgcuacaGGGAGUCGUGUc -3'
miRNA:   3'- -CCg---CGGCCGUCUGa-------------CCUUCAGCACAa -5'
22262 5' -57.1 NC_005045.1 + 21802 1.07 0.000659
Target:  5'- gGGCGCCGGCAGACUGGAAGUCGUGUUc -3'
miRNA:   3'- -CCGCGGCCGUCUGACCUUCAGCACAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.