miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22263 5' -56.2 NC_005045.1 + 25504 0.66 0.564853
Target:  5'- -cCAGU-GGGACGGCcUGGGGguG-Cg -3'
miRNA:   3'- gaGUCGuCCCUGUCGaACCUCguCaG- -5'
22263 5' -56.2 NC_005045.1 + 37994 0.66 0.520712
Target:  5'- aUCGGCGGccagaGGGCAGCgccUGGGcGCAGg- -3'
miRNA:   3'- gAGUCGUC-----CCUGUCGa--ACCU-CGUCag -5'
22263 5' -56.2 NC_005045.1 + 33912 0.67 0.499144
Target:  5'- gCUCGGC-GGGcCAGCccaGGGGCGGcCu -3'
miRNA:   3'- -GAGUCGuCCCuGUCGaa-CCUCGUCaG- -5'
22263 5' -56.2 NC_005045.1 + 32860 0.67 0.48851
Target:  5'- -gCAGCGuGGACcGCUucgUGGAGCacGGUCa -3'
miRNA:   3'- gaGUCGUcCCUGuCGA---ACCUCG--UCAG- -5'
22263 5' -56.2 NC_005045.1 + 6015 0.67 0.477983
Target:  5'- cCUCaAGCAGGGcuugaccCGGCUggUGGAGguaGGUCa -3'
miRNA:   3'- -GAG-UCGUCCCu------GUCGA--ACCUCg--UCAG- -5'
22263 5' -56.2 NC_005045.1 + 36122 0.67 0.467569
Target:  5'- gUCAGgguCAGGGACuGCUcGGAGguGa- -3'
miRNA:   3'- gAGUC---GUCCCUGuCGAaCCUCguCag -5'
22263 5' -56.2 NC_005045.1 + 21632 0.7 0.327505
Target:  5'- --aAGCugcGGGACGGCagcgUGGAGCAG-Cg -3'
miRNA:   3'- gagUCGu--CCCUGUCGa---ACCUCGUCaG- -5'
22263 5' -56.2 NC_005045.1 + 22455 0.9 0.012829
Target:  5'- gCUCAGCAGGGACAGCUUGGcGaAGUCg -3'
miRNA:   3'- -GAGUCGUCCCUGUCGAACCuCgUCAG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.