miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22264 3' -55.4 NC_005045.1 + 9611 0.66 0.624024
Target:  5'- cGCGCuUCgUCCGGGaCggugGCUGGAGUa -3'
miRNA:   3'- uUGCGcAGaAGGUCCaGa---UGGCCUCG- -5'
22264 3' -55.4 NC_005045.1 + 26576 0.66 0.624024
Target:  5'- -cCGCGUUggcgUCCGGGUCcACCuuGGGUa -3'
miRNA:   3'- uuGCGCAGa---AGGUCCAGaUGGc-CUCG- -5'
22264 3' -55.4 NC_005045.1 + 7983 0.66 0.601565
Target:  5'- aGGCGCG-CUUgCAGGUCUGCUGc--- -3'
miRNA:   3'- -UUGCGCaGAAgGUCCAGAUGGCcucg -5'
22264 3' -55.4 NC_005045.1 + 21734 0.67 0.579214
Target:  5'- gAACaCGaCUUCCA-GUCUGCCGGcGCc -3'
miRNA:   3'- -UUGcGCaGAAGGUcCAGAUGGCCuCG- -5'
22264 3' -55.4 NC_005045.1 + 33330 0.67 0.566995
Target:  5'- cGAUG-GUC-UCCAGG-CUagccuccucggucACCGGAGCg -3'
miRNA:   3'- -UUGCgCAGaAGGUCCaGA-------------UGGCCUCG- -5'
22264 3' -55.4 NC_005045.1 + 29535 0.67 0.546052
Target:  5'- --gGCcUCUUCCAGGcugagCUGCCGGGa- -3'
miRNA:   3'- uugCGcAGAAGGUCCa----GAUGGCCUcg -5'
22264 3' -55.4 NC_005045.1 + 24596 0.68 0.524282
Target:  5'- aGACGCGuUCUcgCCGGGcgUGCUGGAGa -3'
miRNA:   3'- -UUGCGC-AGAa-GGUCCagAUGGCCUCg -5'
22264 3' -55.4 NC_005045.1 + 11584 0.68 0.49228
Target:  5'- cACGCGUCgcaggaaggCCAGGUaCUcgucCCGGuAGCg -3'
miRNA:   3'- uUGCGCAGaa-------GGUCCA-GAu---GGCC-UCG- -5'
22264 3' -55.4 NC_005045.1 + 18941 0.69 0.421457
Target:  5'- gAGCGCGUCUucaacUCCGGGgcggggUGCUGG-GCa -3'
miRNA:   3'- -UUGCGCAGA-----AGGUCCag----AUGGCCuCG- -5'
22264 3' -55.4 NC_005045.1 + 8405 0.69 0.421457
Target:  5'- --aGCGag-UCCGGGUCUACCGGcuuGUc -3'
miRNA:   3'- uugCGCagaAGGUCCAGAUGGCCu--CG- -5'
22264 3' -55.4 NC_005045.1 + 38559 0.7 0.383842
Target:  5'- -cCGCG-CUUCCGGGacuUCUGCCuGGAcGCc -3'
miRNA:   3'- uuGCGCaGAAGGUCC---AGAUGG-CCU-CG- -5'
22264 3' -55.4 NC_005045.1 + 12776 0.73 0.273506
Target:  5'- cACGCGgcugccggCUUCCGGGUCguccucguccuucgACgGGAGCu -3'
miRNA:   3'- uUGCGCa-------GAAGGUCCAGa-------------UGgCCUCG- -5'
22264 3' -55.4 NC_005045.1 + 19476 0.77 0.148795
Target:  5'- -cUGCGcCaUCgCAGGUCUGCUGGAGCu -3'
miRNA:   3'- uuGCGCaGaAG-GUCCAGAUGGCCUCG- -5'
22264 3' -55.4 NC_005045.1 + 24646 1.1 0.000546
Target:  5'- gAACGCGUCUUCCAGGUCUACCGGAGCg -3'
miRNA:   3'- -UUGCGCAGAAGGUCCAGAUGGCCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.