miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22264 5' -54.2 NC_005045.1 + 40548 0.74 0.236887
Target:  5'- cCGGCCUUG-UCGcCCUGGA--AGGCAGu -3'
miRNA:   3'- -GUCGGAACuAGU-GGACCUagUCCGUC- -5'
22264 5' -54.2 NC_005045.1 + 24321 0.69 0.486616
Target:  5'- -cGCCUgGAUCGCCUGGGcaacgUCgAGGCc- -3'
miRNA:   3'- guCGGAaCUAGUGGACCU-----AG-UCCGuc -5'
22264 5' -54.2 NC_005045.1 + 31138 0.68 0.519049
Target:  5'- gGGCCUgggGcAUUACCUGGGcaguggcaaugcUgGGGCAGg -3'
miRNA:   3'- gUCGGAa--C-UAGUGGACCU------------AgUCCGUC- -5'
22264 5' -54.2 NC_005045.1 + 41023 0.68 0.552302
Target:  5'- gGGCCUUGGguaUCGCCcagggGGAgaUCAagcGGCAGa -3'
miRNA:   3'- gUCGGAACU---AGUGGa----CCU--AGU---CCGUC- -5'
22264 5' -54.2 NC_005045.1 + 6217 0.66 0.654742
Target:  5'- gCGGCUaagGA-CACCUGG--CAGGCAGc -3'
miRNA:   3'- -GUCGGaa-CUaGUGGACCuaGUCCGUC- -5'
22264 5' -54.2 NC_005045.1 + 24609 1.09 0.00073
Target:  5'- gCAGCCUUGAUCACCUGGAUCAGGCAGg -3'
miRNA:   3'- -GUCGGAACUAGUGGACCUAGUCCGUC- -5'
22264 5' -54.2 NC_005045.1 + 10350 0.74 0.250024
Target:  5'- uCGGCCUUGGUCAgCgGGGUCuuGCGGg -3'
miRNA:   3'- -GUCGGAACUAGUgGaCCUAGucCGUC- -5'
22264 5' -54.2 NC_005045.1 + 22027 0.71 0.39579
Target:  5'- uCAGUagCUUGAUCACCUGcGUCAGGaccgcCAGg -3'
miRNA:   3'- -GUCG--GAACUAGUGGACcUAGUCC-----GUC- -5'
22264 5' -54.2 NC_005045.1 + 31416 0.69 0.455175
Target:  5'- --uCCUUGAUCGCCUGGA--AGGUg- -3'
miRNA:   3'- gucGGAACUAGUGGACCUagUCCGuc -5'
22264 5' -54.2 NC_005045.1 + 23307 0.69 0.508138
Target:  5'- gAGCCUgcugcugGAUCACC-GGGUUcGGCAu -3'
miRNA:   3'- gUCGGAa------CUAGUGGaCCUAGuCCGUc -5'
22264 5' -54.2 NC_005045.1 + 30178 0.68 0.541139
Target:  5'- uUAGCCUcgccuuccuUGGcCGCCUGGAUCAuGCGa -3'
miRNA:   3'- -GUCGGA---------ACUaGUGGACCUAGUcCGUc -5'
22264 5' -54.2 NC_005045.1 + 29480 0.67 0.574826
Target:  5'- aCAGCCUUGGcCAggauacuguuacCCUGGGUacggaagccaCGGGCGGc -3'
miRNA:   3'- -GUCGGAACUaGU------------GGACCUA----------GUCCGUC- -5'
22264 5' -54.2 NC_005045.1 + 20319 0.67 0.608968
Target:  5'- -uGUCgugGAUgGCCUGGAUCGGGa-- -3'
miRNA:   3'- guCGGaa-CUAgUGGACCUAGUCCguc -5'
22264 5' -54.2 NC_005045.1 + 23793 0.66 0.663877
Target:  5'- aCAGCCUUGGUCugCgcaucgacauaGGUCAGGaCGc -3'
miRNA:   3'- -GUCGGAACUAGugGac---------CUAGUCC-GUc -5'
22264 5' -54.2 NC_005045.1 + 14125 0.66 0.666158
Target:  5'- gCAGCCUUGuUgGCCaGGGcgaGGGCGGc -3'
miRNA:   3'- -GUCGGAACuAgUGGaCCUag-UCCGUC- -5'
22264 5' -54.2 NC_005045.1 + 35562 0.66 0.684346
Target:  5'- gCAGCaaCUUGGUCGCCgGGAauacguugcgaaAGGCAGu -3'
miRNA:   3'- -GUCG--GAACUAGUGGaCCUag----------UCCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.