miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22265 3' -54.3 NC_005045.1 + 185 0.66 0.673878
Target:  5'- cGCCCUgCGGUg----GGCuACCAGCGc -3'
miRNA:   3'- aUGGGAaGUCAagcuaCCG-UGGUCGC- -5'
22265 3' -54.3 NC_005045.1 + 42248 0.66 0.673878
Target:  5'- cGCCCUgCGGUg----GGCuACCAGCGc -3'
miRNA:   3'- aUGGGAaGUCAagcuaCCG-UGGUCGC- -5'
22265 3' -54.3 NC_005045.1 + 11830 0.67 0.6283
Target:  5'- gGCCCUgaUCGGUUucucggCGAUGGaguguGCCGGCc -3'
miRNA:   3'- aUGGGA--AGUCAA------GCUACCg----UGGUCGc -5'
22265 3' -54.3 NC_005045.1 + 7164 0.67 0.616886
Target:  5'- --gCCUUCAGUcUGGUGGC-CCugGGCGu -3'
miRNA:   3'- augGGAAGUCAaGCUACCGuGG--UCGC- -5'
22265 3' -54.3 NC_005045.1 + 2928 0.67 0.605487
Target:  5'- gACuCCUggcgGGUUCGugguagugGGCGCCGGCGu -3'
miRNA:   3'- aUG-GGAag--UCAAGCua------CCGUGGUCGC- -5'
22265 3' -54.3 NC_005045.1 + 38387 0.67 0.594113
Target:  5'- -gUCCUUgAGgaacUUGGUGGCGgCAGCGa -3'
miRNA:   3'- auGGGAAgUCa---AGCUACCGUgGUCGC- -5'
22265 3' -54.3 NC_005045.1 + 37285 0.68 0.537945
Target:  5'- aUACCCUUCAucGUgaucUUGAcuucacUGGaCGCCGGCGg -3'
miRNA:   3'- -AUGGGAAGU--CA----AGCU------ACC-GUGGUCGC- -5'
22265 3' -54.3 NC_005045.1 + 8661 0.68 0.537945
Target:  5'- gGCCCUUCAuGUaCGccGGCagcACCAGCc -3'
miRNA:   3'- aUGGGAAGU-CAaGCuaCCG---UGGUCGc -5'
22265 3' -54.3 NC_005045.1 + 30825 0.68 0.526913
Target:  5'- --gCCUUCgAGUaCGAccGCACCAGCGg -3'
miRNA:   3'- augGGAAG-UCAaGCUacCGUGGUCGC- -5'
22265 3' -54.3 NC_005045.1 + 10250 0.68 0.526913
Target:  5'- aUGCCCUUCAGUgaggCGAccgGGCguaugGCCcGCa -3'
miRNA:   3'- -AUGGGAAGUCAa---GCUa--CCG-----UGGuCGc -5'
22265 3' -54.3 NC_005045.1 + 34665 0.68 0.525815
Target:  5'- aGCCCUggaagcgUCAGUUCGAuaccuuccUGGCcaGCCAGg- -3'
miRNA:   3'- aUGGGA-------AGUCAAGCU--------ACCG--UGGUCgc -5'
22265 3' -54.3 NC_005045.1 + 15109 0.68 0.515968
Target:  5'- cUACCCgagCAGUUCGAccgcagcaUGGCA--GGCGg -3'
miRNA:   3'- -AUGGGaa-GUCAAGCU--------ACCGUggUCGC- -5'
22265 3' -54.3 NC_005045.1 + 41835 0.69 0.505115
Target:  5'- -----aUCAGguucUCGAUGGUGCCGGCGa -3'
miRNA:   3'- augggaAGUCa---AGCUACCGUGGUCGC- -5'
22265 3' -54.3 NC_005045.1 + 25935 0.69 0.483713
Target:  5'- gGCCCggCAGgcgcUCGAagGGCACCuGCu -3'
miRNA:   3'- aUGGGaaGUCa---AGCUa-CCGUGGuCGc -5'
22265 3' -54.3 NC_005045.1 + 37640 0.69 0.452459
Target:  5'- gUGCCCUUcCAGggugCGcgGG-ACCGGCGg -3'
miRNA:   3'- -AUGGGAA-GUCaa--GCuaCCgUGGUCGC- -5'
22265 3' -54.3 NC_005045.1 + 20978 0.82 0.072525
Target:  5'- gGCCCaUCAGUUCGGauggGGCGCCGGCc -3'
miRNA:   3'- aUGGGaAGUCAAGCUa---CCGUGGUCGc -5'
22265 3' -54.3 NC_005045.1 + 25179 1.08 0.000862
Target:  5'- aUACCCUUCAGUUCGAUGGCACCAGCGg -3'
miRNA:   3'- -AUGGGAAGUCAAGCUACCGUGGUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.