Results 1 - 9 of 9 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
22265 | 5' | -48.7 | NC_005045.1 | + | 32232 | 0.66 | 0.956793 |
Target: 5'- uGGCGCUGgcGUggGUGCucugcugggGUCUGGugcGGGa -3' miRNA: 3'- -CCGUGGCuaCAa-CAUG---------UAGACCu--UCC- -5' |
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22265 | 5' | -48.7 | NC_005045.1 | + | 13530 | 0.66 | 0.956793 |
Target: 5'- cGGCAUCGuguacGUUGUugAUCaGGAAcucGGu -3' miRNA: 3'- -CCGUGGCua---CAACAugUAGaCCUU---CC- -5' |
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22265 | 5' | -48.7 | NC_005045.1 | + | 1110 | 0.66 | 0.952353 |
Target: 5'- uGCGCCuAUGgcuUGUGCcgCgcuUGGAAGGu -3' miRNA: 3'- cCGUGGcUACa--ACAUGuaG---ACCUUCC- -5' |
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22265 | 5' | -48.7 | NC_005045.1 | + | 10218 | 0.66 | 0.947616 |
Target: 5'- uGGUGCUGGacUGUgagaUGUAC--CUGGAAGGc -3' miRNA: 3'- -CCGUGGCU--ACA----ACAUGuaGACCUUCC- -5' |
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22265 | 5' | -48.7 | NC_005045.1 | + | 39461 | 0.67 | 0.937235 |
Target: 5'- cGGCgagGCUGGUGUccagcaUGUACugaagCUGGAAGc -3' miRNA: 3'- -CCG---UGGCUACA------ACAUGua---GACCUUCc -5' |
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22265 | 5' | -48.7 | NC_005045.1 | + | 12861 | 0.67 | 0.912781 |
Target: 5'- cGGCACUGAcaUGcacUUGUACcgcCUGGcAGGGa -3' miRNA: 3'- -CCGUGGCU--AC---AACAUGua-GACC-UUCC- -5' |
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22265 | 5' | -48.7 | NC_005045.1 | + | 34339 | 0.7 | 0.830997 |
Target: 5'- gGGCACCGAUaagGUGCAggagCUGacGGGg -3' miRNA: 3'- -CCGUGGCUAcaaCAUGUa---GACcuUCC- -5' |
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22265 | 5' | -48.7 | NC_005045.1 | + | 40126 | 0.7 | 0.830997 |
Target: 5'- cGGUGgUGAUGUUGUGaAUCUGGu-GGa -3' miRNA: 3'- -CCGUgGCUACAACAUgUAGACCuuCC- -5' |
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22265 | 5' | -48.7 | NC_005045.1 | + | 25139 | 1.14 | 0.001976 |
Target: 5'- gGGCACCGAUGUUGUACAUCUGGAAGGu -3' miRNA: 3'- -CCGUGGCUACAACAUGUAGACCUUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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