miRNA display CGI


Results 1 - 9 of 9 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22265 5' -48.7 NC_005045.1 + 32232 0.66 0.956793
Target:  5'- uGGCGCUGgcGUggGUGCucugcugggGUCUGGugcGGGa -3'
miRNA:   3'- -CCGUGGCuaCAa-CAUG---------UAGACCu--UCC- -5'
22265 5' -48.7 NC_005045.1 + 13530 0.66 0.956793
Target:  5'- cGGCAUCGuguacGUUGUugAUCaGGAAcucGGu -3'
miRNA:   3'- -CCGUGGCua---CAACAugUAGaCCUU---CC- -5'
22265 5' -48.7 NC_005045.1 + 1110 0.66 0.952353
Target:  5'- uGCGCCuAUGgcuUGUGCcgCgcuUGGAAGGu -3'
miRNA:   3'- cCGUGGcUACa--ACAUGuaG---ACCUUCC- -5'
22265 5' -48.7 NC_005045.1 + 10218 0.66 0.947616
Target:  5'- uGGUGCUGGacUGUgagaUGUAC--CUGGAAGGc -3'
miRNA:   3'- -CCGUGGCU--ACA----ACAUGuaGACCUUCC- -5'
22265 5' -48.7 NC_005045.1 + 39461 0.67 0.937235
Target:  5'- cGGCgagGCUGGUGUccagcaUGUACugaagCUGGAAGc -3'
miRNA:   3'- -CCG---UGGCUACA------ACAUGua---GACCUUCc -5'
22265 5' -48.7 NC_005045.1 + 12861 0.67 0.912781
Target:  5'- cGGCACUGAcaUGcacUUGUACcgcCUGGcAGGGa -3'
miRNA:   3'- -CCGUGGCU--AC---AACAUGua-GACC-UUCC- -5'
22265 5' -48.7 NC_005045.1 + 34339 0.7 0.830997
Target:  5'- gGGCACCGAUaagGUGCAggagCUGacGGGg -3'
miRNA:   3'- -CCGUGGCUAcaaCAUGUa---GACcuUCC- -5'
22265 5' -48.7 NC_005045.1 + 40126 0.7 0.830997
Target:  5'- cGGUGgUGAUGUUGUGaAUCUGGu-GGa -3'
miRNA:   3'- -CCGUgGCUACAACAUgUAGACCuuCC- -5'
22265 5' -48.7 NC_005045.1 + 25139 1.14 0.001976
Target:  5'- gGGCACCGAUGUUGUACAUCUGGAAGGu -3'
miRNA:   3'- -CCGUGGCUACAACAUGUAGACCUUCC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.