miRNA display CGI


Results 1 - 10 of 10 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22266 3' -46.9 NC_005045.1 + 927 0.66 0.966769
Target:  5'- -cUC-CCUGGGGCcuucccacGCGuauaGAGACCCACGc -3'
miRNA:   3'- aaAGaGGAUUUCG--------CGU----UUUUGGGUGC- -5'
22266 3' -46.9 NC_005045.1 + 28047 0.66 0.976655
Target:  5'- --gUUCCUGuGGCGCAucAGCgaCACGg -3'
miRNA:   3'- aaaGAGGAUuUCGCGUuuUUGg-GUGC- -5'
22266 3' -46.9 NC_005045.1 + 33312 0.66 0.962898
Target:  5'- --cCUCCUcggucaccGGAGCGCccuuguuGGCCCACu -3'
miRNA:   3'- aaaGAGGA--------UUUCGCGuuu----UUGGGUGc -5'
22266 3' -46.9 NC_005045.1 + 18021 0.67 0.949437
Target:  5'- ----aCCUGAuacAGCaGCAGAucGCCCACGa -3'
miRNA:   3'- aaagaGGAUU---UCG-CGUUUu-UGGGUGC- -5'
22266 3' -46.9 NC_005045.1 + 18767 0.68 0.933067
Target:  5'- ----gCC-AAGGCGCAGAAGCaCCAUGu -3'
miRNA:   3'- aaagaGGaUUUCGCGUUUUUG-GGUGC- -5'
22266 3' -46.9 NC_005045.1 + 31943 0.68 0.938854
Target:  5'- ----gCCUGGAGCGCcuGGACCC-Ca -3'
miRNA:   3'- aaagaGGAUUUCGCGuuUUUGGGuGc -5'
22266 3' -46.9 NC_005045.1 + 23125 0.68 0.938854
Target:  5'- -gUCUCCU---GCGCGGccuGGGCCUGCGc -3'
miRNA:   3'- aaAGAGGAuuuCGCGUU---UUUGGGUGC- -5'
22266 3' -46.9 NC_005045.1 + 7319 0.69 0.874867
Target:  5'- --aCUCCUGgcuaaagcAAGCGCAAu--CCCugGc -3'
miRNA:   3'- aaaGAGGAU--------UUCGCGUUuuuGGGugC- -5'
22266 3' -46.9 NC_005045.1 + 11811 0.7 0.847877
Target:  5'- --gCUaCCUGGAGCGCugcGAGGCCCugauCGg -3'
miRNA:   3'- aaaGA-GGAUUUCGCGu--UUUUGGGu---GC- -5'
22266 3' -46.9 NC_005045.1 + 25297 1.07 0.006549
Target:  5'- gUUUCUCCUAAAGCGCAAAAACCCACGc -3'
miRNA:   3'- -AAAGAGGAUUUCGCGUUUUUGGGUGC- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.