Results 1 - 10 of 10 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22266 | 3' | -46.9 | NC_005045.1 | + | 927 | 0.66 | 0.966769 |
Target: 5'- -cUC-CCUGGGGCcuucccacGCGuauaGAGACCCACGc -3' miRNA: 3'- aaAGaGGAUUUCG--------CGU----UUUUGGGUGC- -5' |
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22266 | 3' | -46.9 | NC_005045.1 | + | 7319 | 0.69 | 0.874867 |
Target: 5'- --aCUCCUGgcuaaagcAAGCGCAAu--CCCugGc -3' miRNA: 3'- aaaGAGGAU--------UUCGCGUUuuuGGGugC- -5' |
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22266 | 3' | -46.9 | NC_005045.1 | + | 11811 | 0.7 | 0.847877 |
Target: 5'- --gCUaCCUGGAGCGCugcGAGGCCCugauCGg -3' miRNA: 3'- aaaGA-GGAUUUCGCGu--UUUUGGGu---GC- -5' |
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22266 | 3' | -46.9 | NC_005045.1 | + | 18021 | 0.67 | 0.949437 |
Target: 5'- ----aCCUGAuacAGCaGCAGAucGCCCACGa -3' miRNA: 3'- aaagaGGAUU---UCG-CGUUUu-UGGGUGC- -5' |
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22266 | 3' | -46.9 | NC_005045.1 | + | 18767 | 0.68 | 0.933067 |
Target: 5'- ----gCC-AAGGCGCAGAAGCaCCAUGu -3' miRNA: 3'- aaagaGGaUUUCGCGUUUUUG-GGUGC- -5' |
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22266 | 3' | -46.9 | NC_005045.1 | + | 23125 | 0.68 | 0.938854 |
Target: 5'- -gUCUCCU---GCGCGGccuGGGCCUGCGc -3' miRNA: 3'- aaAGAGGAuuuCGCGUU---UUUGGGUGC- -5' |
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22266 | 3' | -46.9 | NC_005045.1 | + | 25297 | 1.07 | 0.006549 |
Target: 5'- gUUUCUCCUAAAGCGCAAAAACCCACGc -3' miRNA: 3'- -AAAGAGGAUUUCGCGUUUUUGGGUGC- -5' |
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22266 | 3' | -46.9 | NC_005045.1 | + | 28047 | 0.66 | 0.976655 |
Target: 5'- --gUUCCUGuGGCGCAucAGCgaCACGg -3' miRNA: 3'- aaaGAGGAUuUCGCGUuuUUGg-GUGC- -5' |
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22266 | 3' | -46.9 | NC_005045.1 | + | 31943 | 0.68 | 0.938854 |
Target: 5'- ----gCCUGGAGCGCcuGGACCC-Ca -3' miRNA: 3'- aaagaGGAUUUCGCGuuUUUGGGuGc -5' |
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22266 | 3' | -46.9 | NC_005045.1 | + | 33312 | 0.66 | 0.962898 |
Target: 5'- --cCUCCUcggucaccGGAGCGCccuuguuGGCCCACu -3' miRNA: 3'- aaaGAGGA--------UUUCGCGuuu----UUGGGUGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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