miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22268 3' -52.6 NC_005045.1 + 7701 0.66 0.762962
Target:  5'- ---cGCUG-UACagcaGCGGCAGcccuGGCGUCa -3'
miRNA:   3'- acauCGACuAUG----UGCCGUCu---CCGUAG- -5'
22268 3' -52.6 NC_005045.1 + 23995 0.67 0.707484
Target:  5'- ---cGCUGAgcaaUAC-CGaGCGGAGGUAUCc -3'
miRNA:   3'- acauCGACU----AUGuGC-CGUCUCCGUAG- -5'
22268 3' -52.6 NC_005045.1 + 21917 0.67 0.707484
Target:  5'- gUGUcccGGCUGucggccuCGCGGCGGAucGCAUCa -3'
miRNA:   3'- -ACA---UCGACuau----GUGCCGUCUc-CGUAG- -5'
22268 3' -52.6 NC_005045.1 + 39041 0.67 0.684622
Target:  5'- --aAGCUGA--CACGGCAGucGCAg- -3'
miRNA:   3'- acaUCGACUauGUGCCGUCucCGUag -5'
22268 3' -52.6 NC_005045.1 + 23941 0.68 0.62671
Target:  5'- ---cGCUGcguauUGCAUGGCcuGGGCAUCg -3'
miRNA:   3'- acauCGACu----AUGUGCCGucUCCGUAG- -5'
22268 3' -52.6 NC_005045.1 + 37300 0.69 0.568911
Target:  5'- cUGUGGCUGAguuuggcacuCGCGGCAGucugucguGGCGc- -3'
miRNA:   3'- -ACAUCGACUau--------GUGCCGUCu-------CCGUag -5'
22268 3' -52.6 NC_005045.1 + 27431 0.71 0.448146
Target:  5'- aGUGGCUGuccGUGgACGGCGacGGGGcCAUCu -3'
miRNA:   3'- aCAUCGAC---UAUgUGCCGU--CUCC-GUAG- -5'
22268 3' -52.6 NC_005045.1 + 9448 0.73 0.342946
Target:  5'- cUGUAcuCUGAUGCACGGCccaacGAgGGCGUCg -3'
miRNA:   3'- -ACAUc-GACUAUGUGCCGu----CU-CCGUAG- -5'
22268 3' -52.6 NC_005045.1 + 19800 0.73 0.342946
Target:  5'- cUGUAugacGCUGGUAUACGGCAccacguucaaGGGCGUCg -3'
miRNA:   3'- -ACAU----CGACUAUGUGCCGUc---------UCCGUAG- -5'
22268 3' -52.6 NC_005045.1 + 2486 0.74 0.317518
Target:  5'- aGUGGCUGGUgcuACACGGCA-AGGUAc- -3'
miRNA:   3'- aCAUCGACUA---UGUGCCGUcUCCGUag -5'
22268 3' -52.6 NC_005045.1 + 27852 1.09 0.001072
Target:  5'- cUGUAGCUGAUACACGGCAGAGGCAUCc -3'
miRNA:   3'- -ACAUCGACUAUGUGCCGUCUCCGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.