miRNA display CGI


Results 1 - 9 of 9 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22270 3' -56.6 NC_005045.1 + 2815 0.76 0.131414
Target:  5'- -gCGAUGGGUGCAgCCUUGGCgGCCa- -3'
miRNA:   3'- uaGCUGCCUACGUgGGAACUG-CGGcu -5'
22270 3' -56.6 NC_005045.1 + 5002 0.68 0.414148
Target:  5'- uGUCGcugaaGCGGAccaGCACCUgauaGACGCCGGc -3'
miRNA:   3'- -UAGC-----UGCCUa--CGUGGGaa--CUGCGGCU- -5'
22270 3' -56.6 NC_005045.1 + 5086 0.69 0.359672
Target:  5'- cGUCGAgGGuUGCAgCCUgGGCuGCCGAc -3'
miRNA:   3'- -UAGCUgCCuACGUgGGAaCUG-CGGCU- -5'
22270 3' -56.6 NC_005045.1 + 13565 0.66 0.525877
Target:  5'- cUCGGCGGcgGUGUCCUUGugGCa-- -3'
miRNA:   3'- uAGCUGCCuaCGUGGGAACugCGgcu -5'
22270 3' -56.6 NC_005045.1 + 26679 0.66 0.569362
Target:  5'- -aCGGCGGAccUGcCGgCCUUGcUGCCGGg -3'
miRNA:   3'- uaGCUGCCU--AC-GUgGGAACuGCGGCU- -5'
22270 3' -56.6 NC_005045.1 + 28628 1.07 0.000721
Target:  5'- cAUCGACGGAUGCACCCUUGACGCCGAa -3'
miRNA:   3'- -UAGCUGCCUACGUGGGAACUGCGGCU- -5'
22270 3' -56.6 NC_005045.1 + 31845 0.67 0.473412
Target:  5'- -cCGGCGaGGUGgACCCUaacuucGACGCUGGg -3'
miRNA:   3'- uaGCUGC-CUACgUGGGAa-----CUGCGGCU- -5'
22270 3' -56.6 NC_005045.1 + 32218 0.69 0.359672
Target:  5'- -gUGGCGGGUGC--UCUUGGCGCUGGc -3'
miRNA:   3'- uaGCUGCCUACGugGGAACUGCGGCU- -5'
22270 3' -56.6 NC_005045.1 + 32403 0.66 0.555113
Target:  5'- cUCGGCGGucauggcuacuucugGCAgCCCUacaguaGGCGCCGAu -3'
miRNA:   3'- uAGCUGCCua-------------CGU-GGGAa-----CUGCGGCU- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.