Results 1 - 18 of 18 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
22270 | 5' | -62.2 | NC_005045.1 | + | 26823 | 0.66 | 0.32962 |
Target: 5'- aCCgGGGCCUUGGUGgagCCGgUGGCc -3' miRNA: 3'- -GGaCUCGGAGCCGCgaaGGCgGCCGa -5' |
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22270 | 5' | -62.2 | NC_005045.1 | + | 5354 | 0.66 | 0.321887 |
Target: 5'- aCgUGcGCgCUCGGCGgcCUggagCCGUCGGCUc -3' miRNA: 3'- -GgACuCG-GAGCCGC--GAa---GGCGGCCGA- -5' |
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22270 | 5' | -62.2 | NC_005045.1 | + | 5860 | 0.66 | 0.319594 |
Target: 5'- cCUUGAGCagcagcuuuucguaCUCGucggcGCGCUUCgCGUCGGCc -3' miRNA: 3'- -GGACUCG--------------GAGC-----CGCGAAG-GCGGCCGa -5' |
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22270 | 5' | -62.2 | NC_005045.1 | + | 16554 | 0.66 | 0.314291 |
Target: 5'- -gUGAGCCggCaGUGCUUCCGCaacuGGUg -3' miRNA: 3'- ggACUCGGa-GcCGCGAAGGCGg---CCGa -5' |
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22270 | 5' | -62.2 | NC_005045.1 | + | 38901 | 0.66 | 0.314291 |
Target: 5'- --cGGGCCUCGGgGCgcagguaCGCCaGCa -3' miRNA: 3'- ggaCUCGGAGCCgCGaag----GCGGcCGa -5' |
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22270 | 5' | -62.2 | NC_005045.1 | + | 26664 | 0.66 | 0.292321 |
Target: 5'- -aUGAGCCUcaaugcuaCGGCGgacCUGCCGGCc -3' miRNA: 3'- ggACUCGGA--------GCCGCgaaGGCGGCCGa -5' |
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22270 | 5' | -62.2 | NC_005045.1 | + | 6937 | 0.67 | 0.275623 |
Target: 5'- --aGGGUaUCGGCGCUgaacugguacgggCCGCCGaGCUg -3' miRNA: 3'- ggaCUCGgAGCCGCGAa------------GGCGGC-CGA- -5' |
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22270 | 5' | -62.2 | NC_005045.1 | + | 40097 | 0.67 | 0.271569 |
Target: 5'- aCgGAGCgCUCGuuGCGCUugUCCGCUGGgUa -3' miRNA: 3'- gGaCUCG-GAGC--CGCGA--AGGCGGCCgA- -5' |
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22270 | 5' | -62.2 | NC_005045.1 | + | 28743 | 0.67 | 0.258403 |
Target: 5'- gCCUGAGCCUgGauggaGUGCgcCUGCuCGGCg -3' miRNA: 3'- -GGACUCGGAgC-----CGCGaaGGCG-GCCGa -5' |
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22270 | 5' | -62.2 | NC_005045.1 | + | 6133 | 0.67 | 0.252018 |
Target: 5'- gCUGAGUCUCcGCGUcgUCCcaauacagGCCGGCc -3' miRNA: 3'- gGACUCGGAGcCGCGa-AGG--------CGGCCGa -5' |
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22270 | 5' | -62.2 | NC_005045.1 | + | 8534 | 0.68 | 0.233641 |
Target: 5'- --aGGGCCUCGuCGCUca-GCCGGCg -3' miRNA: 3'- ggaCUCGGAGCcGCGAaggCGGCCGa -5' |
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22270 | 5' | -62.2 | NC_005045.1 | + | 23417 | 0.69 | 0.190099 |
Target: 5'- gCC--GGCCcCGGUaGC-UCCGCCGGCUg -3' miRNA: 3'- -GGacUCGGaGCCG-CGaAGGCGGCCGA- -5' |
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22270 | 5' | -62.2 | NC_005045.1 | + | 28135 | 0.69 | 0.190099 |
Target: 5'- gCCgggGAGCCUCugguggauaGCGCUguggugccgCUGCCGGCa -3' miRNA: 3'- -GGa--CUCGGAGc--------CGCGAa--------GGCGGCCGa -5' |
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22270 | 5' | -62.2 | NC_005045.1 | + | 8626 | 0.71 | 0.149786 |
Target: 5'- gCCgGGGCCUCGGUGCUgguggcagcgccUCCugauGCgGGCa -3' miRNA: 3'- -GGaCUCGGAGCCGCGA------------AGG----CGgCCGa -5' |
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22270 | 5' | -62.2 | NC_005045.1 | + | 12509 | 0.72 | 0.127396 |
Target: 5'- uCCaGAGCCUUgagGGCGUcgCCGCUGGUg -3' miRNA: 3'- -GGaCUCGGAG---CCGCGaaGGCGGCCGa -5' |
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22270 | 5' | -62.2 | NC_005045.1 | + | 18821 | 0.72 | 0.120648 |
Target: 5'- uUCUGcGCCUUGGCGCUguaguaUCCGCCaucGCa -3' miRNA: 3'- -GGACuCGGAGCCGCGA------AGGCGGc--CGa -5' |
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22270 | 5' | -62.2 | NC_005045.1 | + | 33274 | 0.73 | 0.105206 |
Target: 5'- gCCUGAGCCUUGGUGUaa-C-CCGGCa -3' miRNA: 3'- -GGACUCGGAGCCGCGaagGcGGCCGa -5' |
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22270 | 5' | -62.2 | NC_005045.1 | + | 28593 | 1.09 | 0.000159 |
Target: 5'- gCCUGAGCCUCGGCGCUUCCGCCGGCUa -3' miRNA: 3'- -GGACUCGGAGCCGCGAAGGCGGCCGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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