miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22270 5' -62.2 NC_005045.1 + 26823 0.66 0.32962
Target:  5'- aCCgGGGCCUUGGUGgagCCGgUGGCc -3'
miRNA:   3'- -GGaCUCGGAGCCGCgaaGGCgGCCGa -5'
22270 5' -62.2 NC_005045.1 + 5354 0.66 0.321887
Target:  5'- aCgUGcGCgCUCGGCGgcCUggagCCGUCGGCUc -3'
miRNA:   3'- -GgACuCG-GAGCCGC--GAa---GGCGGCCGA- -5'
22270 5' -62.2 NC_005045.1 + 5860 0.66 0.319594
Target:  5'- cCUUGAGCagcagcuuuucguaCUCGucggcGCGCUUCgCGUCGGCc -3'
miRNA:   3'- -GGACUCG--------------GAGC-----CGCGAAG-GCGGCCGa -5'
22270 5' -62.2 NC_005045.1 + 16554 0.66 0.314291
Target:  5'- -gUGAGCCggCaGUGCUUCCGCaacuGGUg -3'
miRNA:   3'- ggACUCGGa-GcCGCGAAGGCGg---CCGa -5'
22270 5' -62.2 NC_005045.1 + 38901 0.66 0.314291
Target:  5'- --cGGGCCUCGGgGCgcagguaCGCCaGCa -3'
miRNA:   3'- ggaCUCGGAGCCgCGaag----GCGGcCGa -5'
22270 5' -62.2 NC_005045.1 + 26664 0.66 0.292321
Target:  5'- -aUGAGCCUcaaugcuaCGGCGgacCUGCCGGCc -3'
miRNA:   3'- ggACUCGGA--------GCCGCgaaGGCGGCCGa -5'
22270 5' -62.2 NC_005045.1 + 6937 0.67 0.275623
Target:  5'- --aGGGUaUCGGCGCUgaacugguacgggCCGCCGaGCUg -3'
miRNA:   3'- ggaCUCGgAGCCGCGAa------------GGCGGC-CGA- -5'
22270 5' -62.2 NC_005045.1 + 40097 0.67 0.271569
Target:  5'- aCgGAGCgCUCGuuGCGCUugUCCGCUGGgUa -3'
miRNA:   3'- gGaCUCG-GAGC--CGCGA--AGGCGGCCgA- -5'
22270 5' -62.2 NC_005045.1 + 28743 0.67 0.258403
Target:  5'- gCCUGAGCCUgGauggaGUGCgcCUGCuCGGCg -3'
miRNA:   3'- -GGACUCGGAgC-----CGCGaaGGCG-GCCGa -5'
22270 5' -62.2 NC_005045.1 + 6133 0.67 0.252018
Target:  5'- gCUGAGUCUCcGCGUcgUCCcaauacagGCCGGCc -3'
miRNA:   3'- gGACUCGGAGcCGCGa-AGG--------CGGCCGa -5'
22270 5' -62.2 NC_005045.1 + 8534 0.68 0.233641
Target:  5'- --aGGGCCUCGuCGCUca-GCCGGCg -3'
miRNA:   3'- ggaCUCGGAGCcGCGAaggCGGCCGa -5'
22270 5' -62.2 NC_005045.1 + 23417 0.69 0.190099
Target:  5'- gCC--GGCCcCGGUaGC-UCCGCCGGCUg -3'
miRNA:   3'- -GGacUCGGaGCCG-CGaAGGCGGCCGA- -5'
22270 5' -62.2 NC_005045.1 + 28135 0.69 0.190099
Target:  5'- gCCgggGAGCCUCugguggauaGCGCUguggugccgCUGCCGGCa -3'
miRNA:   3'- -GGa--CUCGGAGc--------CGCGAa--------GGCGGCCGa -5'
22270 5' -62.2 NC_005045.1 + 8626 0.71 0.149786
Target:  5'- gCCgGGGCCUCGGUGCUgguggcagcgccUCCugauGCgGGCa -3'
miRNA:   3'- -GGaCUCGGAGCCGCGA------------AGG----CGgCCGa -5'
22270 5' -62.2 NC_005045.1 + 12509 0.72 0.127396
Target:  5'- uCCaGAGCCUUgagGGCGUcgCCGCUGGUg -3'
miRNA:   3'- -GGaCUCGGAG---CCGCGaaGGCGGCCGa -5'
22270 5' -62.2 NC_005045.1 + 18821 0.72 0.120648
Target:  5'- uUCUGcGCCUUGGCGCUguaguaUCCGCCaucGCa -3'
miRNA:   3'- -GGACuCGGAGCCGCGA------AGGCGGc--CGa -5'
22270 5' -62.2 NC_005045.1 + 33274 0.73 0.105206
Target:  5'- gCCUGAGCCUUGGUGUaa-C-CCGGCa -3'
miRNA:   3'- -GGACUCGGAGCCGCGaagGcGGCCGa -5'
22270 5' -62.2 NC_005045.1 + 28593 1.09 0.000159
Target:  5'- gCCUGAGCCUCGGCGCUUCCGCCGGCUa -3'
miRNA:   3'- -GGACUCGGAGCCGCGAAGGCGGCCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.