miRNA display CGI


Results 21 - 40 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22272 3' -58.5 NC_005045.1 + 16168 0.68 0.396779
Target:  5'- cGCUGAUGUCgauGGGCUuGCCGCagAGCGGg -3'
miRNA:   3'- -CGGCUGUAG---UCUGGcCGGUGg-UCGCC- -5'
22272 3' -58.5 NC_005045.1 + 17912 0.66 0.476756
Target:  5'- cCCGuuCAUCgcGGACCagccuccucggucagGGCCACCucGGCGGc -3'
miRNA:   3'- cGGCu-GUAG--UCUGG---------------CCGGUGG--UCGCC- -5'
22272 3' -58.5 NC_005045.1 + 21119 0.67 0.453057
Target:  5'- cGCCGGC--CA-ACUGGCCAUC-GCGGa -3'
miRNA:   3'- -CGGCUGuaGUcUGGCCGGUGGuCGCC- -5'
22272 3' -58.5 NC_005045.1 + 22066 0.71 0.257053
Target:  5'- cGCCGAgAUgcGACUGGCCGCUGGaUGGa -3'
miRNA:   3'- -CGGCUgUAguCUGGCCGGUGGUC-GCC- -5'
22272 3' -58.5 NC_005045.1 + 23483 0.68 0.396779
Target:  5'- aGCCGGCGgagCuaccgGGGCCGGCUG--AGCGGg -3'
miRNA:   3'- -CGGCUGUa--G-----UCUGGCCGGUggUCGCC- -5'
22272 3' -58.5 NC_005045.1 + 23804 0.72 0.202123
Target:  5'- uGCCGGCGUCuucaaccaacacgcGGACCcugccaccaaGGCCGCCAuCGGu -3'
miRNA:   3'- -CGGCUGUAG--------------UCUGG----------CCGGUGGUcGCC- -5'
22272 3' -58.5 NC_005045.1 + 23852 0.68 0.369518
Target:  5'- cGCCGGCAgccugcuUCAGGaCGGCCucACCaccgacGGCGGc -3'
miRNA:   3'- -CGGCUGU-------AGUCUgGCCGG--UGG------UCGCC- -5'
22272 3' -58.5 NC_005045.1 + 24707 0.69 0.320503
Target:  5'- uGUCGGCAgcuugcuuggcggUCAGGCCGGUCAgguccaguuucuCCAGCa- -3'
miRNA:   3'- -CGGCUGU-------------AGUCUGGCCGGU------------GGUCGcc -5'
22272 3' -58.5 NC_005045.1 + 25184 0.7 0.306031
Target:  5'- cGCCGAUAcccuUCAGuucgaUGG-CACCAGCGGu -3'
miRNA:   3'- -CGGCUGU----AGUCug---GCCgGUGGUCGCC- -5'
22272 3' -58.5 NC_005045.1 + 25921 0.74 0.155982
Target:  5'- uCCGAUcccguGUCAGGacuUCGGCgGCCAGCGGu -3'
miRNA:   3'- cGGCUG-----UAGUCU---GGCCGgUGGUCGCC- -5'
22272 3' -58.5 NC_005045.1 + 26244 0.66 0.503104
Target:  5'- gGuuGGCGaugaaCAGGucaUCGGCCACCguGGCGGc -3'
miRNA:   3'- -CggCUGUa----GUCU---GGCCGGUGG--UCGCC- -5'
22272 3' -58.5 NC_005045.1 + 27435 0.73 0.178441
Target:  5'- gGCCGGCugaguacaucCAGGCggCGGCCuCCAGCGGc -3'
miRNA:   3'- -CGGCUGua--------GUCUG--GCCGGuGGUCGCC- -5'
22272 3' -58.5 NC_005045.1 + 27505 0.66 0.472763
Target:  5'- gGCCGcCGccuggauguacUCAG-CCGGCC-CCGGCa- -3'
miRNA:   3'- -CGGCuGU-----------AGUCuGGCCGGuGGUCGcc -5'
22272 3' -58.5 NC_005045.1 + 28387 0.72 0.226137
Target:  5'- uGuuGAagggCGGACauGCCGCCAGCGGc -3'
miRNA:   3'- -CggCUgua-GUCUGgcCGGUGGUCGCC- -5'
22272 3' -58.5 NC_005045.1 + 28538 0.68 0.387844
Target:  5'- cGCCGAgGcUCAGGCCggGGCguUCGGCGu -3'
miRNA:   3'- -CGGCUgU-AGUCUGG--CCGguGGUCGCc -5'
22272 3' -58.5 NC_005045.1 + 28780 0.68 0.409507
Target:  5'- cGCCGugGUacucuucugacccagCAGGCCGGCCuuaGCCugAGCcuGGa -3'
miRNA:   3'- -CGGCugUA---------------GUCUGGCCGG---UGG--UCG--CC- -5'
22272 3' -58.5 NC_005045.1 + 28819 1.13 0.000209
Target:  5'- cGCCGACAUCAGACCGGCCACCAGCGGg -3'
miRNA:   3'- -CGGCUGUAGUCUGGCCGGUGGUCGCC- -5'
22272 3' -58.5 NC_005045.1 + 29427 0.73 0.188202
Target:  5'- gGCCaaGGCugugCAGGCUcaGGCCACCGGCGa -3'
miRNA:   3'- -CGG--CUGua--GUCUGG--CCGGUGGUCGCc -5'
22272 3' -58.5 NC_005045.1 + 29543 0.65 0.52171
Target:  5'- uGCgCGACAaggUAGGCaugcaguuccuggCGGCCagccuggacaugaACCAGCGGg -3'
miRNA:   3'- -CG-GCUGUa--GUCUG-------------GCCGG-------------UGGUCGCC- -5'
22272 3' -58.5 NC_005045.1 + 29638 0.69 0.345202
Target:  5'- cGCUGGuuCAUgucCAGGCUGGCCGCCAGg-- -3'
miRNA:   3'- -CGGCU--GUA---GUCUGGCCGGUGGUCgcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.