Results 1 - 19 of 19 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
22273 | 3' | -59.6 | NC_005045.1 | + | 10491 | 0.66 | 0.43274 |
Target: 5'- aGGCgGUACuacgcuGGUACgGCUacCACCGCGCc -3' miRNA: 3'- -CCGgUAUGc-----CCGUG-CGA--GUGGCGCGu -5' |
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22273 | 3' | -59.6 | NC_005045.1 | + | 10209 | 0.66 | 0.43274 |
Target: 5'- aGGCCGUccaGGGCagggaagcgGCGCcCGCUGCGgGa -3' miRNA: 3'- -CCGGUAug-CCCG---------UGCGaGUGGCGCgU- -5' |
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22273 | 3' | -59.6 | NC_005045.1 | + | 24133 | 0.66 | 0.43274 |
Target: 5'- cGCCAUACcuGCcuuacgACGCUCGCgcaGCGCAg -3' miRNA: 3'- cCGGUAUGccCG------UGCGAGUGg--CGCGU- -5' |
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22273 | 3' | -59.6 | NC_005045.1 | + | 33936 | 0.66 | 0.413924 |
Target: 5'- aGGCCAUugugcaGCGGGCGCgggacaggGCU-ACCG-GCAu -3' miRNA: 3'- -CCGGUA------UGCCCGUG--------CGAgUGGCgCGU- -5' |
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22273 | 3' | -59.6 | NC_005045.1 | + | 33844 | 0.66 | 0.39562 |
Target: 5'- aGGCCGccccUGGGCugGCcCGCCGaGCc -3' miRNA: 3'- -CCGGUau--GCCCGugCGaGUGGCgCGu -5' |
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22273 | 3' | -59.6 | NC_005045.1 | + | 32118 | 0.67 | 0.376972 |
Target: 5'- cGGUCGUGCuGGCAuggcugcUGCUgGCgGCGCu -3' miRNA: 3'- -CCGGUAUGcCCGU-------GCGAgUGgCGCGu -5' |
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22273 | 3' | -59.6 | NC_005045.1 | + | 16625 | 0.67 | 0.368303 |
Target: 5'- cGCCAagaaGGGCGCGCUgCACUGgcugggcCGCAa -3' miRNA: 3'- cCGGUaug-CCCGUGCGA-GUGGC-------GCGU- -5' |
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22273 | 3' | -59.6 | NC_005045.1 | + | 27393 | 0.68 | 0.31999 |
Target: 5'- aGGcCCAUGaaacccaGGGCACGCU--CCGCaGCGa -3' miRNA: 3'- -CC-GGUAUg------CCCGUGCGAguGGCG-CGU- -5' |
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22273 | 3' | -59.6 | NC_005045.1 | + | 15185 | 0.68 | 0.312288 |
Target: 5'- cGGCCAcUACGcGGaCACuGgaCACUGCGCu -3' miRNA: 3'- -CCGGU-AUGC-CC-GUG-CgaGUGGCGCGu -5' |
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22273 | 3' | -59.6 | NC_005045.1 | + | 16073 | 0.68 | 0.312288 |
Target: 5'- gGGCCGaGCaGGGCAaacucugccCGCUCugCG-GCAa -3' miRNA: 3'- -CCGGUaUG-CCCGU---------GCGAGugGCgCGU- -5' |
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22273 | 3' | -59.6 | NC_005045.1 | + | 7587 | 0.68 | 0.290029 |
Target: 5'- gGGCCA---GGGCaugaaGCGUUCuugauCCGCGCAu -3' miRNA: 3'- -CCGGUaugCCCG-----UGCGAGu----GGCGCGU- -5' |
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22273 | 3' | -59.6 | NC_005045.1 | + | 33369 | 0.7 | 0.230742 |
Target: 5'- aGCCAgcaccuucACGGGCGCGCUC-CCGaGUg -3' miRNA: 3'- cCGGUa-------UGCCCGUGCGAGuGGCgCGu -5' |
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22273 | 3' | -59.6 | NC_005045.1 | + | 7280 | 0.71 | 0.202438 |
Target: 5'- aGGUCAUGCGGGCGCcguagGCggGCCGC-CGu -3' miRNA: 3'- -CCGGUAUGCCCGUG-----CGagUGGCGcGU- -5' |
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22273 | 3' | -59.6 | NC_005045.1 | + | 13739 | 0.71 | 0.197151 |
Target: 5'- cGCCGUACGGGU-CGCacCACCG-GCAu -3' miRNA: 3'- cCGGUAUGCCCGuGCGa-GUGGCgCGU- -5' |
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22273 | 3' | -59.6 | NC_005045.1 | + | 34237 | 0.72 | 0.159058 |
Target: 5'- cGGCagUAUGuCGGGC-CGCUCAgcauuggcCCGCGCAg -3' miRNA: 3'- -CCG--GUAU-GCCCGuGCGAGU--------GGCGCGU- -5' |
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22273 | 3' | -59.6 | NC_005045.1 | + | 18134 | 0.73 | 0.150631 |
Target: 5'- aGGCaAUGCGGGCGuCGUUCugCGcCGCc -3' miRNA: 3'- -CCGgUAUGCCCGU-GCGAGugGC-GCGu -5' |
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22273 | 3' | -59.6 | NC_005045.1 | + | 30535 | 0.73 | 0.146171 |
Target: 5'- uGGCCAgcgaccgcaagcaUGCGGGUcUGCUCACCaGCGaCAc -3' miRNA: 3'- -CCGGU-------------AUGCCCGuGCGAGUGG-CGC-GU- -5' |
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22273 | 3' | -59.6 | NC_005045.1 | + | 40595 | 0.73 | 0.134985 |
Target: 5'- aGGCCGgcgaGGGCAgcCGCcagggcugCGCCGCGCAg -3' miRNA: 3'- -CCGGUaug-CCCGU--GCGa-------GUGGCGCGU- -5' |
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22273 | 3' | -59.6 | NC_005045.1 | + | 29116 | 1.1 | 0.000207 |
Target: 5'- cGGCCAUACGGGCACGCUCACCGCGCAg -3' miRNA: 3'- -CCGGUAUGCCCGUGCGAGUGGCGCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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