miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22273 3' -59.6 NC_005045.1 + 10491 0.66 0.43274
Target:  5'- aGGCgGUACuacgcuGGUACgGCUacCACCGCGCc -3'
miRNA:   3'- -CCGgUAUGc-----CCGUG-CGA--GUGGCGCGu -5'
22273 3' -59.6 NC_005045.1 + 10209 0.66 0.43274
Target:  5'- aGGCCGUccaGGGCagggaagcgGCGCcCGCUGCGgGa -3'
miRNA:   3'- -CCGGUAug-CCCG---------UGCGaGUGGCGCgU- -5'
22273 3' -59.6 NC_005045.1 + 24133 0.66 0.43274
Target:  5'- cGCCAUACcuGCcuuacgACGCUCGCgcaGCGCAg -3'
miRNA:   3'- cCGGUAUGccCG------UGCGAGUGg--CGCGU- -5'
22273 3' -59.6 NC_005045.1 + 33936 0.66 0.413924
Target:  5'- aGGCCAUugugcaGCGGGCGCgggacaggGCU-ACCG-GCAu -3'
miRNA:   3'- -CCGGUA------UGCCCGUG--------CGAgUGGCgCGU- -5'
22273 3' -59.6 NC_005045.1 + 33844 0.66 0.39562
Target:  5'- aGGCCGccccUGGGCugGCcCGCCGaGCc -3'
miRNA:   3'- -CCGGUau--GCCCGugCGaGUGGCgCGu -5'
22273 3' -59.6 NC_005045.1 + 32118 0.67 0.376972
Target:  5'- cGGUCGUGCuGGCAuggcugcUGCUgGCgGCGCu -3'
miRNA:   3'- -CCGGUAUGcCCGU-------GCGAgUGgCGCGu -5'
22273 3' -59.6 NC_005045.1 + 16625 0.67 0.368303
Target:  5'- cGCCAagaaGGGCGCGCUgCACUGgcugggcCGCAa -3'
miRNA:   3'- cCGGUaug-CCCGUGCGA-GUGGC-------GCGU- -5'
22273 3' -59.6 NC_005045.1 + 27393 0.68 0.31999
Target:  5'- aGGcCCAUGaaacccaGGGCACGCU--CCGCaGCGa -3'
miRNA:   3'- -CC-GGUAUg------CCCGUGCGAguGGCG-CGU- -5'
22273 3' -59.6 NC_005045.1 + 15185 0.68 0.312288
Target:  5'- cGGCCAcUACGcGGaCACuGgaCACUGCGCu -3'
miRNA:   3'- -CCGGU-AUGC-CC-GUG-CgaGUGGCGCGu -5'
22273 3' -59.6 NC_005045.1 + 16073 0.68 0.312288
Target:  5'- gGGCCGaGCaGGGCAaacucugccCGCUCugCG-GCAa -3'
miRNA:   3'- -CCGGUaUG-CCCGU---------GCGAGugGCgCGU- -5'
22273 3' -59.6 NC_005045.1 + 7587 0.68 0.290029
Target:  5'- gGGCCA---GGGCaugaaGCGUUCuugauCCGCGCAu -3'
miRNA:   3'- -CCGGUaugCCCG-----UGCGAGu----GGCGCGU- -5'
22273 3' -59.6 NC_005045.1 + 33369 0.7 0.230742
Target:  5'- aGCCAgcaccuucACGGGCGCGCUC-CCGaGUg -3'
miRNA:   3'- cCGGUa-------UGCCCGUGCGAGuGGCgCGu -5'
22273 3' -59.6 NC_005045.1 + 7280 0.71 0.202438
Target:  5'- aGGUCAUGCGGGCGCcguagGCggGCCGC-CGu -3'
miRNA:   3'- -CCGGUAUGCCCGUG-----CGagUGGCGcGU- -5'
22273 3' -59.6 NC_005045.1 + 13739 0.71 0.197151
Target:  5'- cGCCGUACGGGU-CGCacCACCG-GCAu -3'
miRNA:   3'- cCGGUAUGCCCGuGCGa-GUGGCgCGU- -5'
22273 3' -59.6 NC_005045.1 + 34237 0.72 0.159058
Target:  5'- cGGCagUAUGuCGGGC-CGCUCAgcauuggcCCGCGCAg -3'
miRNA:   3'- -CCG--GUAU-GCCCGuGCGAGU--------GGCGCGU- -5'
22273 3' -59.6 NC_005045.1 + 18134 0.73 0.150631
Target:  5'- aGGCaAUGCGGGCGuCGUUCugCGcCGCc -3'
miRNA:   3'- -CCGgUAUGCCCGU-GCGAGugGC-GCGu -5'
22273 3' -59.6 NC_005045.1 + 30535 0.73 0.146171
Target:  5'- uGGCCAgcgaccgcaagcaUGCGGGUcUGCUCACCaGCGaCAc -3'
miRNA:   3'- -CCGGU-------------AUGCCCGuGCGAGUGG-CGC-GU- -5'
22273 3' -59.6 NC_005045.1 + 40595 0.73 0.134985
Target:  5'- aGGCCGgcgaGGGCAgcCGCcagggcugCGCCGCGCAg -3'
miRNA:   3'- -CCGGUaug-CCCGU--GCGa-------GUGGCGCGU- -5'
22273 3' -59.6 NC_005045.1 + 29116 1.1 0.000207
Target:  5'- cGGCCAUACGGGCACGCUCACCGCGCAg -3'
miRNA:   3'- -CCGGUAUGCCCGUGCGAGUGGCGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.