miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22275 5' -58.2 NC_005045.1 + 34576 0.66 0.445048
Target:  5'- aGACGCCCuGCcggugggccaUCGU-GGCCAGCUc- -3'
miRNA:   3'- aUUGCGGGuCG----------AGCAgCCGGUUGGag -5'
22275 5' -58.2 NC_005045.1 + 16629 0.66 0.445048
Target:  5'- uUGACGCaCCAGUUgcggaagcacUGcCGGCUcACCUCa -3'
miRNA:   3'- -AUUGCG-GGUCGA----------GCaGCCGGuUGGAG- -5'
22275 5' -58.2 NC_005045.1 + 24976 0.66 0.445048
Target:  5'- gUGACgGCCCAGCggGUgGGCUGcgauuGCCUUg -3'
miRNA:   3'- -AUUG-CGGGUCGagCAgCCGGU-----UGGAG- -5'
22275 5' -58.2 NC_005045.1 + 28102 0.66 0.445048
Target:  5'- -uGCGCCaCAGgaaCUCGcCGGuCCAGCCg- -3'
miRNA:   3'- auUGCGG-GUC---GAGCaGCC-GGUUGGag -5'
22275 5' -58.2 NC_005045.1 + 33425 0.66 0.425502
Target:  5'- -uGCGCCCucuccgGGCUgGgccaggaGGUCGGCCUCa -3'
miRNA:   3'- auUGCGGG------UCGAgCag-----CCGGUUGGAG- -5'
22275 5' -58.2 NC_005045.1 + 39253 0.67 0.413075
Target:  5'- aUAACGCgCCuGCUCGUCcagggucgggaaccGGCCcGGCCa- -3'
miRNA:   3'- -AUUGCG-GGuCGAGCAG--------------CCGG-UUGGag -5'
22275 5' -58.2 NC_005045.1 + 15474 0.67 0.406476
Target:  5'- cGGCGCCCcgccucGCUCGUacacguccgccaCGGCCcGCCg- -3'
miRNA:   3'- aUUGCGGGu-----CGAGCA------------GCCGGuUGGag -5'
22275 5' -58.2 NC_005045.1 + 14397 0.67 0.387994
Target:  5'- ---gGCCgGGCUUGaUCGaGCCGucgGCCUCg -3'
miRNA:   3'- auugCGGgUCGAGC-AGC-CGGU---UGGAG- -5'
22275 5' -58.2 NC_005045.1 + 28473 0.67 0.378962
Target:  5'- cGGCGCCCAGgUUGUCgaGGuCCGuCUUCa -3'
miRNA:   3'- aUUGCGGGUCgAGCAG--CC-GGUuGGAG- -5'
22275 5' -58.2 NC_005045.1 + 31751 0.67 0.370072
Target:  5'- -cGCGCaUUGGCUCGUUGGCCcgcuGCCa- -3'
miRNA:   3'- auUGCG-GGUCGAGCAGCCGGu---UGGag -5'
22275 5' -58.2 NC_005045.1 + 33587 0.68 0.34427
Target:  5'- cAACGCCCuGCUCagccaucgccUUGGCCAucAUCUCg -3'
miRNA:   3'- aUUGCGGGuCGAGc---------AGCCGGU--UGGAG- -5'
22275 5' -58.2 NC_005045.1 + 24426 0.68 0.34427
Target:  5'- -uGCGCuCCAGCUcuucaccggcaCGaCGGCCcuuGGCCUCg -3'
miRNA:   3'- auUGCG-GGUCGA-----------GCaGCCGG---UUGGAG- -5'
22275 5' -58.2 NC_005045.1 + 34192 0.68 0.319787
Target:  5'- -cAUGUCCAGCgacaGUCGGCCcuuGCCg- -3'
miRNA:   3'- auUGCGGGUCGag--CAGCCGGu--UGGag -5'
22275 5' -58.2 NC_005045.1 + 26288 0.68 0.319787
Target:  5'- -uACGCCCuuGaugUCGgugCGGUCGGCCUCg -3'
miRNA:   3'- auUGCGGGu-Cg--AGCa--GCCGGUUGGAG- -5'
22275 5' -58.2 NC_005045.1 + 5753 0.7 0.260975
Target:  5'- gUAGCGgCCAGCUUGUgccaGGCCGACg-- -3'
miRNA:   3'- -AUUGCgGGUCGAGCAg---CCGGUUGgag -5'
22275 5' -58.2 NC_005045.1 + 7126 0.71 0.228887
Target:  5'- -cACGUCCGGCUCuccugcUGGCCAguucGCCUCg -3'
miRNA:   3'- auUGCGGGUCGAGca----GCCGGU----UGGAG- -5'
22275 5' -58.2 NC_005045.1 + 22488 0.72 0.19485
Target:  5'- cAGCGaCuCCAGCUCGUacaGGCCGAguuUCUCg -3'
miRNA:   3'- aUUGC-G-GGUCGAGCAg--CCGGUU---GGAG- -5'
22275 5' -58.2 NC_005045.1 + 5643 0.73 0.156409
Target:  5'- gAAUGCCCGGCUC-UUGGCCAcgcggcgcAUCUCc -3'
miRNA:   3'- aUUGCGGGUCGAGcAGCCGGU--------UGGAG- -5'
22275 5' -58.2 NC_005045.1 + 17262 0.75 0.105332
Target:  5'- -uGCGUCCguGGUUCGUCGGCCAuCCUa -3'
miRNA:   3'- auUGCGGG--UCGAGCAGCCGGUuGGAg -5'
22275 5' -58.2 NC_005045.1 + 31320 1.08 0.000352
Target:  5'- gUAACGCCCAGCUCGUCGGCCAACCUCa -3'
miRNA:   3'- -AUUGCGGGUCGAGCAGCCGGUUGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.