Results 21 - 40 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22276 | 3' | -54 | NC_005045.1 | + | 3119 | 0.67 | 0.634191 |
Target: 5'- -cGCCUgacaGGUGACAUGCCCGgacaGCggacUGCCc -3' miRNA: 3'- guCGGG----UCGUUGUAUGGGC----UGa---ACGG- -5' |
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22276 | 3' | -54 | NC_005045.1 | + | 41218 | 0.67 | 0.634191 |
Target: 5'- aCAGCCUGuGCAACcgcCCCGGCgcccgcugUGCUg -3' miRNA: 3'- -GUCGGGU-CGUUGuauGGGCUGa-------ACGG- -5' |
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22276 | 3' | -54 | NC_005045.1 | + | 6011 | 0.67 | 0.634191 |
Target: 5'- uCAGCCUcaAGCAggGCuugACCCGGCUgGUg -3' miRNA: 3'- -GUCGGG--UCGU--UGua-UGGGCUGAaCGg -5' |
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22276 | 3' | -54 | NC_005045.1 | + | 21405 | 0.67 | 0.62166 |
Target: 5'- -uGCCCAGCAgaccaucaGCGaguUugCCGAugaugguCUUGCCc -3' miRNA: 3'- guCGGGUCGU--------UGU---AugGGCU-------GAACGG- -5' |
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22276 | 3' | -54 | NC_005045.1 | + | 23290 | 0.67 | 0.600052 |
Target: 5'- -cGCCgCAGCAACuggccauCCCGACccagcaGCCg -3' miRNA: 3'- guCGG-GUCGUUGuau----GGGCUGaa----CGG- -5' |
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22276 | 3' | -54 | NC_005045.1 | + | 14970 | 0.67 | 0.600052 |
Target: 5'- gGGCCCAa-AGCGUGcucCCUGACgUGCCg -3' miRNA: 3'- gUCGGGUcgUUGUAU---GGGCUGaACGG- -5' |
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22276 | 3' | -54 | NC_005045.1 | + | 5512 | 0.68 | 0.588718 |
Target: 5'- aCGGCCaaaccugcgguCAGCAgGCAUACCCaGGCcaugauggUUGCCu -3' miRNA: 3'- -GUCGG-----------GUCGU-UGUAUGGG-CUG--------AACGG- -5' |
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22276 | 3' | -54 | NC_005045.1 | + | 5155 | 0.68 | 0.588718 |
Target: 5'- cUAGCUC-GCAAUAgGCCCGGaggGCCg -3' miRNA: 3'- -GUCGGGuCGUUGUaUGGGCUgaaCGG- -5' |
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22276 | 3' | -54 | NC_005045.1 | + | 37616 | 0.68 | 0.588718 |
Target: 5'- aAGUUCGGUGACuaccGUACCCGugU-GCCc -3' miRNA: 3'- gUCGGGUCGUUG----UAUGGGCugAaCGG- -5' |
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22276 | 3' | -54 | NC_005045.1 | + | 6027 | 0.68 | 0.577422 |
Target: 5'- cCGGUCC-GCAAgcuucCGUACCCGGCU-GCg -3' miRNA: 3'- -GUCGGGuCGUU-----GUAUGGGCUGAaCGg -5' |
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22276 | 3' | -54 | NC_005045.1 | + | 22294 | 0.68 | 0.577422 |
Target: 5'- aCAGCUCGGCGuacuccaucgcCGUGCCCuuCUUGCg -3' miRNA: 3'- -GUCGGGUCGUu----------GUAUGGGcuGAACGg -5' |
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22276 | 3' | -54 | NC_005045.1 | + | 5067 | 0.68 | 0.566175 |
Target: 5'- aGGCCCGcacGUAAUAgGCCCGGCccuccggGCCu -3' miRNA: 3'- gUCGGGU---CGUUGUaUGGGCUGaa-----CGG- -5' |
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22276 | 3' | -54 | NC_005045.1 | + | 10273 | 0.68 | 0.554985 |
Target: 5'- aCAGUCCAGCAcCAgACCgGAgUccagGCCg -3' miRNA: 3'- -GUCGGGUCGUuGUaUGGgCUgAa---CGG- -5' |
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22276 | 3' | -54 | NC_005045.1 | + | 5020 | 0.68 | 0.543861 |
Target: 5'- gCAGCCCAggcuGCAACc--CUCGACgaaGCCa -3' miRNA: 3'- -GUCGGGU----CGUUGuauGGGCUGaa-CGG- -5' |
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22276 | 3' | -54 | NC_005045.1 | + | 20152 | 0.68 | 0.543861 |
Target: 5'- uCGGCCC-GCAGCcggACCCGcACUU-CCu -3' miRNA: 3'- -GUCGGGuCGUUGua-UGGGC-UGAAcGG- -5' |
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22276 | 3' | -54 | NC_005045.1 | + | 11934 | 0.69 | 0.532811 |
Target: 5'- aGGCCgAGCugaagaAGCugAUGCCCGACUUcCCa -3' miRNA: 3'- gUCGGgUCG------UUG--UAUGGGCUGAAcGG- -5' |
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22276 | 3' | -54 | NC_005045.1 | + | 40526 | 0.69 | 0.532811 |
Target: 5'- gCAGCCCuGGCGGC-UGCCCucgccGGcCUUGUCg -3' miRNA: 3'- -GUCGGG-UCGUUGuAUGGG-----CU-GAACGG- -5' |
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22276 | 3' | -54 | NC_005045.1 | + | 27793 | 0.69 | 0.521842 |
Target: 5'- cCAGCucaCCAGCGACGgucGCCuCGAUacGCCg -3' miRNA: 3'- -GUCG---GGUCGUUGUa--UGG-GCUGaaCGG- -5' |
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22276 | 3' | -54 | NC_005045.1 | + | 41070 | 0.69 | 0.521842 |
Target: 5'- aGGCCCGGUAGCu--CUgGACgaaGCCg -3' miRNA: 3'- gUCGGGUCGUUGuauGGgCUGaa-CGG- -5' |
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22276 | 3' | -54 | NC_005045.1 | + | 18766 | 0.69 | 0.510962 |
Target: 5'- gCGGCgCCAGCAuCAcGCuCCGGCcaggGCCg -3' miRNA: 3'- -GUCG-GGUCGUuGUaUG-GGCUGaa--CGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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