miRNA display CGI


Results 21 - 40 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22276 5' -57.3 NC_005045.1 + 4276 0.66 0.489349
Target:  5'- cCCGGuCAGUAGgcCCcgGCCuacuGCACGuaguGCCa -3'
miRNA:   3'- -GGUC-GUCGUC--GGuaCGGu---CGUGC----UGG- -5'
22276 5' -57.3 NC_005045.1 + 7063 0.66 0.489349
Target:  5'- gCCAGCAGgAGagccggaCGUGCUgcacaugagGGCAccCGGCCa -3'
miRNA:   3'- -GGUCGUCgUCg------GUACGG---------UCGU--GCUGG- -5'
22276 5' -57.3 NC_005045.1 + 28367 0.66 0.489349
Target:  5'- gCCAGCGGCcaauagugguAGCCAgaaaGCCAuCAC-ACCc -3'
miRNA:   3'- -GGUCGUCG----------UCGGUa---CGGUcGUGcUGG- -5'
22276 5' -57.3 NC_005045.1 + 30815 0.66 0.489349
Target:  5'- gUCGGUAGUcGCCuu-CgAGUACGACCg -3'
miRNA:   3'- -GGUCGUCGuCGGuacGgUCGUGCUGG- -5'
22276 5' -57.3 NC_005045.1 + 29468 0.66 0.489349
Target:  5'- cCCGGCAGCucAGCCuggaagagGCCGGCcUGuucuauACCa -3'
miRNA:   3'- -GGUCGUCG--UCGGua------CGGUCGuGC------UGG- -5'
22276 5' -57.3 NC_005045.1 + 39606 0.66 0.488312
Target:  5'- uCCAGCAgaugacgauguucGUGGaCCcUGCCGGCgACGGCg -3'
miRNA:   3'- -GGUCGU-------------CGUC-GGuACGGUCG-UGCUGg -5'
22276 5' -57.3 NC_005045.1 + 2703 0.66 0.485206
Target:  5'- -gGGCAGCGGCCAgguuaaacuccugGuCCAGCGCuuUCu -3'
miRNA:   3'- ggUCGUCGUCGGUa------------C-GGUCGUGcuGG- -5'
22276 5' -57.3 NC_005045.1 + 22339 0.67 0.479021
Target:  5'- gCCAGCGGCccuCCuUGCCcacacGCACG-CCg -3'
miRNA:   3'- -GGUCGUCGuc-GGuACGGu----CGUGCuGG- -5'
22276 5' -57.3 NC_005045.1 + 32674 0.67 0.479021
Target:  5'- gCCAGCucuGCcuuccucaAGCCAgGCaCAGCGgGACUc -3'
miRNA:   3'- -GGUCGu--CG--------UCGGUaCG-GUCGUgCUGG- -5'
22276 5' -57.3 NC_005045.1 + 4107 0.67 0.479021
Target:  5'- -aGGCAGCAGUacagGCCgAGUACGAa- -3'
miRNA:   3'- ggUCGUCGUCGgua-CGG-UCGUGCUgg -5'
22276 5' -57.3 NC_005045.1 + 8645 0.67 0.468801
Target:  5'- -uGGCAGC-GCCuccugAUGCgGGCAaGACCu -3'
miRNA:   3'- ggUCGUCGuCGG-----UACGgUCGUgCUGG- -5'
22276 5' -57.3 NC_005045.1 + 22968 0.67 0.468801
Target:  5'- -gAGCAaucGgGGCCAaGCCAGCAaUGACUu -3'
miRNA:   3'- ggUCGU---CgUCGGUaCGGUCGU-GCUGG- -5'
22276 5' -57.3 NC_005045.1 + 22389 0.67 0.468801
Target:  5'- gCCAGgGGCGagguuCCAgGUCGGCACGAUg -3'
miRNA:   3'- -GGUCgUCGUc----GGUaCGGUCGUGCUGg -5'
22276 5' -57.3 NC_005045.1 + 25356 0.67 0.468801
Target:  5'- gUCGGCAGCucGCCGaucuUGCgCAGgAUGACa -3'
miRNA:   3'- -GGUCGUCGu-CGGU----ACG-GUCgUGCUGg -5'
22276 5' -57.3 NC_005045.1 + 21943 0.67 0.462723
Target:  5'- -aGGCAGCAGUCAcuucgguaaugucugUGucCCGGCuguCGGCCu -3'
miRNA:   3'- ggUCGUCGUCGGU---------------AC--GGUCGu--GCUGG- -5'
22276 5' -57.3 NC_005045.1 + 14573 0.67 0.462723
Target:  5'- cCCGGUcgauGGCAGCCcguacaauguaccggAacUGCC-GCugGACCu -3'
miRNA:   3'- -GGUCG----UCGUCGG---------------U--ACGGuCGugCUGG- -5'
22276 5' -57.3 NC_005045.1 + 9749 0.67 0.458694
Target:  5'- gCCA-CGGCAGCCuacgaggGaCAGCACGcCCu -3'
miRNA:   3'- -GGUcGUCGUCGGua-----CgGUCGUGCuGG- -5'
22276 5' -57.3 NC_005045.1 + 8772 0.67 0.458694
Target:  5'- aCGGCGGaucaAGCCGcGCCuGUacucgGCGGCCc -3'
miRNA:   3'- gGUCGUCg---UCGGUaCGGuCG-----UGCUGG- -5'
22276 5' -57.3 NC_005045.1 + 34200 0.67 0.458694
Target:  5'- ---uCGGCGGUCAUGuCCAGCGacaguCGGCCc -3'
miRNA:   3'- ggucGUCGUCGGUAC-GGUCGU-----GCUGG- -5'
22276 5' -57.3 NC_005045.1 + 35228 0.67 0.458694
Target:  5'- gCgAGgAGCgaGGCCAcGCCaAGCACG-CCg -3'
miRNA:   3'- -GgUCgUCG--UCGGUaCGG-UCGUGCuGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.