Results 1 - 16 of 16 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
22277 | 3' | -57 | NC_005045.1 | + | 8585 | 0.66 | 0.578274 |
Target: 5'- uGC-CGGGGCUGgugcUGcCGGCGUacaugaaGGGCCu -3' miRNA: 3'- -CGaGUCCCGGC----ACaGUCGUAg------CCUGG- -5' |
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22277 | 3' | -57 | NC_005045.1 | + | 29963 | 0.66 | 0.556548 |
Target: 5'- cGCUucCAGGGCCGccaugaugcccUG-CAuGCGUUGGGCa -3' miRNA: 3'- -CGA--GUCCCGGC-----------ACaGU-CGUAGCCUGg -5' |
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22277 | 3' | -57 | NC_005045.1 | + | 28544 | 0.67 | 0.513876 |
Target: 5'- gGCUCA-GGCCGgggcguUCGGCGUCaagGGugCa -3' miRNA: 3'- -CGAGUcCCGGCac----AGUCGUAG---CCugG- -5' |
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22277 | 3' | -57 | NC_005045.1 | + | 17887 | 0.67 | 0.472602 |
Target: 5'- cGgUCAGGGCCaccUCGGCggCGG-CCa -3' miRNA: 3'- -CgAGUCCCGGcacAGUCGuaGCCuGG- -5' |
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22277 | 3' | -57 | NC_005045.1 | + | 34246 | 0.68 | 0.452599 |
Target: 5'- -gUC-GGGCCGc-UCAGCAUUGGcCCg -3' miRNA: 3'- cgAGuCCCGGCacAGUCGUAGCCuGG- -5' |
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22277 | 3' | -57 | NC_005045.1 | + | 13566 | 0.68 | 0.433068 |
Target: 5'- cCUCGGcGGCgGUGUCcuuguGGCAgUCGGugUa -3' miRNA: 3'- cGAGUC-CCGgCACAG-----UCGU-AGCCugG- -5' |
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22277 | 3' | -57 | NC_005045.1 | + | 5231 | 0.68 | 0.433067 |
Target: 5'- aGCUgcCcuGGCCGUGUgcCAGCAgCGGGCa -3' miRNA: 3'- -CGA--GucCCGGCACA--GUCGUaGCCUGg -5' |
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22277 | 3' | -57 | NC_005045.1 | + | 25364 | 0.69 | 0.404714 |
Target: 5'- uGCUCAGGGUCGg--CAGC-UCGccGAUCu -3' miRNA: 3'- -CGAGUCCCGGCacaGUCGuAGC--CUGG- -5' |
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22277 | 3' | -57 | NC_005045.1 | + | 1982 | 0.69 | 0.395526 |
Target: 5'- uGUUCAGGGuuGUGgUAGCGUCcuGGCg -3' miRNA: 3'- -CGAGUCCCggCACaGUCGUAGc-CUGg -5' |
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22277 | 3' | -57 | NC_005045.1 | + | 32545 | 0.69 | 0.386474 |
Target: 5'- aGCUCGcgccgaaGGCCGUGUCAcGUcgCGGgaugGCCg -3' miRNA: 3'- -CGAGUc------CCGGCACAGU-CGuaGCC----UGG- -5' |
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22277 | 3' | -57 | NC_005045.1 | + | 10353 | 0.69 | 0.386474 |
Target: 5'- aGCUC--GGCCuugGUCAGCGgggucuugCGGGCCa -3' miRNA: 3'- -CGAGucCCGGca-CAGUCGUa-------GCCUGG- -5' |
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22277 | 3' | -57 | NC_005045.1 | + | 30519 | 0.69 | 0.37756 |
Target: 5'- uGCUCAGGucgcuuucGCCG-GUCAGCAUguuccaGGcCCg -3' miRNA: 3'- -CGAGUCC--------CGGCaCAGUCGUAg-----CCuGG- -5' |
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22277 | 3' | -57 | NC_005045.1 | + | 10092 | 0.69 | 0.377559 |
Target: 5'- --aCGGGuGCCGUGcCAuCGUCGGugCg -3' miRNA: 3'- cgaGUCC-CGGCACaGUcGUAGCCugG- -5' |
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22277 | 3' | -57 | NC_005045.1 | + | 9882 | 0.71 | 0.296245 |
Target: 5'- gGCgc-GGGCCGccuUCGGgGUCGGGCCa -3' miRNA: 3'- -CGaguCCCGGCac-AGUCgUAGCCUGG- -5' |
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22277 | 3' | -57 | NC_005045.1 | + | 26041 | 0.73 | 0.223263 |
Target: 5'- gGC-CAGGGCUG-GUCGGUAUgcagcaggUGGGCCa -3' miRNA: 3'- -CGaGUCCCGGCaCAGUCGUA--------GCCUGG- -5' |
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22277 | 3' | -57 | NC_005045.1 | + | 33213 | 1.14 | 0.000227 |
Target: 5'- gGCUCAGGGCCGUGUCAGCAUCGGACCg -3' miRNA: 3'- -CGAGUCCCGGCACAGUCGUAGCCUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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