miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22277 3' -57 NC_005045.1 + 8585 0.66 0.578274
Target:  5'- uGC-CGGGGCUGgugcUGcCGGCGUacaugaaGGGCCu -3'
miRNA:   3'- -CGaGUCCCGGC----ACaGUCGUAg------CCUGG- -5'
22277 3' -57 NC_005045.1 + 29963 0.66 0.556548
Target:  5'- cGCUucCAGGGCCGccaugaugcccUG-CAuGCGUUGGGCa -3'
miRNA:   3'- -CGA--GUCCCGGC-----------ACaGU-CGUAGCCUGg -5'
22277 3' -57 NC_005045.1 + 28544 0.67 0.513876
Target:  5'- gGCUCA-GGCCGgggcguUCGGCGUCaagGGugCa -3'
miRNA:   3'- -CGAGUcCCGGCac----AGUCGUAG---CCugG- -5'
22277 3' -57 NC_005045.1 + 17887 0.67 0.472602
Target:  5'- cGgUCAGGGCCaccUCGGCggCGG-CCa -3'
miRNA:   3'- -CgAGUCCCGGcacAGUCGuaGCCuGG- -5'
22277 3' -57 NC_005045.1 + 34246 0.68 0.452599
Target:  5'- -gUC-GGGCCGc-UCAGCAUUGGcCCg -3'
miRNA:   3'- cgAGuCCCGGCacAGUCGUAGCCuGG- -5'
22277 3' -57 NC_005045.1 + 13566 0.68 0.433068
Target:  5'- cCUCGGcGGCgGUGUCcuuguGGCAgUCGGugUa -3'
miRNA:   3'- cGAGUC-CCGgCACAG-----UCGU-AGCCugG- -5'
22277 3' -57 NC_005045.1 + 5231 0.68 0.433067
Target:  5'- aGCUgcCcuGGCCGUGUgcCAGCAgCGGGCa -3'
miRNA:   3'- -CGA--GucCCGGCACA--GUCGUaGCCUGg -5'
22277 3' -57 NC_005045.1 + 25364 0.69 0.404714
Target:  5'- uGCUCAGGGUCGg--CAGC-UCGccGAUCu -3'
miRNA:   3'- -CGAGUCCCGGCacaGUCGuAGC--CUGG- -5'
22277 3' -57 NC_005045.1 + 1982 0.69 0.395526
Target:  5'- uGUUCAGGGuuGUGgUAGCGUCcuGGCg -3'
miRNA:   3'- -CGAGUCCCggCACaGUCGUAGc-CUGg -5'
22277 3' -57 NC_005045.1 + 32545 0.69 0.386474
Target:  5'- aGCUCGcgccgaaGGCCGUGUCAcGUcgCGGgaugGCCg -3'
miRNA:   3'- -CGAGUc------CCGGCACAGU-CGuaGCC----UGG- -5'
22277 3' -57 NC_005045.1 + 10353 0.69 0.386474
Target:  5'- aGCUC--GGCCuugGUCAGCGgggucuugCGGGCCa -3'
miRNA:   3'- -CGAGucCCGGca-CAGUCGUa-------GCCUGG- -5'
22277 3' -57 NC_005045.1 + 30519 0.69 0.37756
Target:  5'- uGCUCAGGucgcuuucGCCG-GUCAGCAUguuccaGGcCCg -3'
miRNA:   3'- -CGAGUCC--------CGGCaCAGUCGUAg-----CCuGG- -5'
22277 3' -57 NC_005045.1 + 10092 0.69 0.377559
Target:  5'- --aCGGGuGCCGUGcCAuCGUCGGugCg -3'
miRNA:   3'- cgaGUCC-CGGCACaGUcGUAGCCugG- -5'
22277 3' -57 NC_005045.1 + 9882 0.71 0.296245
Target:  5'- gGCgc-GGGCCGccuUCGGgGUCGGGCCa -3'
miRNA:   3'- -CGaguCCCGGCac-AGUCgUAGCCUGG- -5'
22277 3' -57 NC_005045.1 + 26041 0.73 0.223263
Target:  5'- gGC-CAGGGCUG-GUCGGUAUgcagcaggUGGGCCa -3'
miRNA:   3'- -CGaGUCCCGGCaCAGUCGUA--------GCCUGG- -5'
22277 3' -57 NC_005045.1 + 33213 1.14 0.000227
Target:  5'- gGCUCAGGGCCGUGUCAGCAUCGGACCg -3'
miRNA:   3'- -CGAGUCCCGGCACAGUCGUAGCCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.