miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22278 5' -56.5 NC_005045.1 + 16036 0.71 0.304203
Target:  5'- cCGCGcAGCCAacagcGCACCUUCACcuugaagcuguGGGCc -3'
miRNA:   3'- aGUGCuUCGGU-----CGUGGAAGUG-----------CCCGc -5'
22278 5' -56.5 NC_005045.1 + 9659 0.67 0.485585
Target:  5'- --gUGAGGgCGGUAUCUUCAaGGGCGu -3'
miRNA:   3'- aguGCUUCgGUCGUGGAAGUgCCCGC- -5'
22278 5' -56.5 NC_005045.1 + 39006 0.66 0.538568
Target:  5'- cCACGAagaacGGCCucaccGcCACCga-GCGGGCGa -3'
miRNA:   3'- aGUGCU-----UCGGu----C-GUGGaagUGCCCGC- -5'
22278 5' -56.5 NC_005045.1 + 4983 0.66 0.548326
Target:  5'- aCGUGAAGCCAGCGCCaucCGCGccguccagucgucGGCa -3'
miRNA:   3'- aGUGCUUCGGUCGUGGaa-GUGC-------------CCGc -5'
22278 5' -56.5 NC_005045.1 + 5041 0.66 0.571298
Target:  5'- -gACGAAGCCAuCGCCca---GGGCGa -3'
miRNA:   3'- agUGCUUCGGUcGUGGaagugCCCGC- -5'
22278 5' -56.5 NC_005045.1 + 10240 0.66 0.571298
Target:  5'- cCugGAAGgCAuGC-CCUUCAgugaggcgacCGGGCGu -3'
miRNA:   3'- aGugCUUCgGU-CGuGGAAGU----------GCCCGC- -5'
22278 5' -56.5 NC_005045.1 + 14130 0.66 0.582321
Target:  5'- -gGCGGucgcaucuucccGGCgGGCACCgcCAUGGGCc -3'
miRNA:   3'- agUGCU------------UCGgUCGUGGaaGUGCCCGc -5'
22278 5' -56.5 NC_005045.1 + 11102 0.66 0.593386
Target:  5'- gCACGAGGUCcccauccuGCACCUgUCGCagugGGGCc -3'
miRNA:   3'- aGUGCUUCGGu-------CGUGGA-AGUG----CCCGc -5'
22278 5' -56.5 NC_005045.1 + 30480 0.66 0.593386
Target:  5'- -aACGAGGCCGuucugagcauGUACCgc--CGGGCGa -3'
miRNA:   3'- agUGCUUCGGU----------CGUGGaaguGCCCGC- -5'
22278 5' -56.5 NC_005045.1 + 26213 0.67 0.47528
Target:  5'- gCcCGAGGCCGaccGCACCgacaUCAaGGGCGu -3'
miRNA:   3'- aGuGCUUCGGU---CGUGGa---AGUgCCCGC- -5'
22278 5' -56.5 NC_005045.1 + 6440 0.68 0.455008
Target:  5'- -gACGAAGCCGucuucccguGCAUCgacggcaaGCGGGCGa -3'
miRNA:   3'- agUGCUUCGGU---------CGUGGaag-----UGCCCGC- -5'
22278 5' -56.5 NC_005045.1 + 27811 0.71 0.311921
Target:  5'- gCcCGuGGCCGGCGCCUaCAUGGaGCGu -3'
miRNA:   3'- aGuGCuUCGGUCGUGGAaGUGCC-CGC- -5'
22278 5' -56.5 NC_005045.1 + 31294 0.7 0.3278
Target:  5'- cCugGGauuGGCCGGUaugGCCUUCcagAUGGGCGa -3'
miRNA:   3'- aGugCU---UCGGUCG---UGGAAG---UGCCCGC- -5'
22278 5' -56.5 NC_005045.1 + 34890 0.69 0.378962
Target:  5'- aCugGAcGCCAGUAUUggCGCGGGUu -3'
miRNA:   3'- aGugCUuCGGUCGUGGaaGUGCCCGc -5'
22278 5' -56.5 NC_005045.1 + 27322 0.69 0.397166
Target:  5'- -uGCGGAGCguGC-CCUggguuUCAUGGGCc -3'
miRNA:   3'- agUGCUUCGguCGuGGA-----AGUGCCCGc -5'
22278 5' -56.5 NC_005045.1 + 17737 0.69 0.415923
Target:  5'- cCACGAAuCCaAGCGCCUguuggACGGGCc -3'
miRNA:   3'- aGUGCUUcGG-UCGUGGAag---UGCCCGc -5'
22278 5' -56.5 NC_005045.1 + 10599 0.68 0.425502
Target:  5'- -aGCGcAAGCCGGagauCACCgUUgACGGGCGu -3'
miRNA:   3'- agUGC-UUCGGUC----GUGG-AAgUGCCCGC- -5'
22278 5' -56.5 NC_005045.1 + 34794 0.68 0.435212
Target:  5'- gCAUGAAcGCCAaccuCACCUUgaacaagguggCGCGGGCGg -3'
miRNA:   3'- aGUGCUU-CGGUc---GUGGAA-----------GUGCCCGC- -5'
22278 5' -56.5 NC_005045.1 + 15949 0.68 0.445048
Target:  5'- aUCAUcGAGCUGGaCGCCUaCACGaGGCGc -3'
miRNA:   3'- -AGUGcUUCGGUC-GUGGAaGUGC-CCGC- -5'
22278 5' -56.5 NC_005045.1 + 41443 0.66 0.582321
Target:  5'- gUUACG--GCCAGCGagguaCUgcUCGCGGGUGu -3'
miRNA:   3'- -AGUGCuuCGGUCGUg----GA--AGUGCCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.