Results 21 - 36 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22278 | 5' | -56.5 | NC_005045.1 | + | 15949 | 0.68 | 0.445048 |
Target: 5'- aUCAUcGAGCUGGaCGCCUaCACGaGGCGc -3' miRNA: 3'- -AGUGcUUCGGUC-GUGGAaGUGC-CCGC- -5' |
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22278 | 5' | -56.5 | NC_005045.1 | + | 4534 | 0.68 | 0.445048 |
Target: 5'- aCGCGGA-CCGGuCACCUUgGCaGGGCc -3' miRNA: 3'- aGUGCUUcGGUC-GUGGAAgUG-CCCGc -5' |
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22278 | 5' | -56.5 | NC_005045.1 | + | 34794 | 0.68 | 0.435212 |
Target: 5'- gCAUGAAcGCCAaccuCACCUUgaacaagguggCGCGGGCGg -3' miRNA: 3'- aGUGCUU-CGGUc---GUGGAA-----------GUGCCCGC- -5' |
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22278 | 5' | -56.5 | NC_005045.1 | + | 10599 | 0.68 | 0.425502 |
Target: 5'- -aGCGcAAGCCGGagauCACCgUUgACGGGCGu -3' miRNA: 3'- agUGC-UUCGGUC----GUGG-AAgUGCCCGC- -5' |
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22278 | 5' | -56.5 | NC_005045.1 | + | 17737 | 0.69 | 0.415923 |
Target: 5'- cCACGAAuCCaAGCGCCUguuggACGGGCc -3' miRNA: 3'- aGUGCUUcGG-UCGUGGAag---UGCCCGc -5' |
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22278 | 5' | -56.5 | NC_005045.1 | + | 14940 | 0.69 | 0.415923 |
Target: 5'- -uGCGGgacAGCCGGUACag-CAgGGGCGg -3' miRNA: 3'- agUGCU---UCGGUCGUGgaaGUgCCCGC- -5' |
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22278 | 5' | -56.5 | NC_005045.1 | + | 36027 | 0.69 | 0.405539 |
Target: 5'- -gGCGAAGCCcagggcacggcgcAGCGCC-UCAUuGGCGg -3' miRNA: 3'- agUGCUUCGG-------------UCGUGGaAGUGcCCGC- -5' |
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22278 | 5' | -56.5 | NC_005045.1 | + | 27322 | 0.69 | 0.397166 |
Target: 5'- -uGCGGAGCguGC-CCUggguuUCAUGGGCc -3' miRNA: 3'- agUGCUUCGguCGuGGA-----AGUGCCCGc -5' |
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22278 | 5' | -56.5 | NC_005045.1 | + | 34890 | 0.69 | 0.378962 |
Target: 5'- aCugGAcGCCAGUAUUggCGCGGGUu -3' miRNA: 3'- aGugCUuCGGUCGUGGaaGUGCCCGc -5' |
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22278 | 5' | -56.5 | NC_005045.1 | + | 41244 | 0.7 | 0.335962 |
Target: 5'- gCAC-AGGCCGGUcaGCC--CACGGGCGg -3' miRNA: 3'- aGUGcUUCGGUCG--UGGaaGUGCCCGC- -5' |
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22278 | 5' | -56.5 | NC_005045.1 | + | 31294 | 0.7 | 0.3278 |
Target: 5'- cCugGGauuGGCCGGUaugGCCUUCcagAUGGGCGa -3' miRNA: 3'- aGugCU---UCGGUCG---UGGAAG---UGCCCGC- -5' |
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22278 | 5' | -56.5 | NC_005045.1 | + | 41660 | 0.71 | 0.311921 |
Target: 5'- uUCACGGAaCCAcCGCCgucCACGGGCa -3' miRNA: 3'- -AGUGCUUcGGUcGUGGaa-GUGCCCGc -5' |
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22278 | 5' | -56.5 | NC_005045.1 | + | 27811 | 0.71 | 0.311921 |
Target: 5'- gCcCGuGGCCGGCGCCUaCAUGGaGCGu -3' miRNA: 3'- aGuGCuUCGGUCGUGGAaGUGCC-CGC- -5' |
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22278 | 5' | -56.5 | NC_005045.1 | + | 16036 | 0.71 | 0.304203 |
Target: 5'- cCGCGcAGCCAacagcGCACCUUCACcuugaagcuguGGGCc -3' miRNA: 3'- aGUGCuUCGGU-----CGUGGAAGUG-----------CCCGc -5' |
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22278 | 5' | -56.5 | NC_005045.1 | + | 32521 | 0.73 | 0.235027 |
Target: 5'- gUCGCGGgauGGCCGGUaucucgGCCUgcuccaCGCGGGCGc -3' miRNA: 3'- -AGUGCU---UCGGUCG------UGGAa-----GUGCCCGC- -5' |
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22278 | 5' | -56.5 | NC_005045.1 | + | 33376 | 1.08 | 0.00059 |
Target: 5'- uUCACGAAGCCAGCACCUUCACGGGCGc -3' miRNA: 3'- -AGUGCUUCGGUCGUGGAAGUGCCCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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