miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22279 5' -55.3 NC_005045.1 + 7019 0.66 0.622081
Target:  5'- cAGCC--AGCUCGgCGGcccguaccAGUUCAGCGc -3'
miRNA:   3'- -UCGGuaUCGAGCaGCCc-------UCAAGUCGC- -5'
22279 5' -55.3 NC_005045.1 + 28903 0.66 0.622081
Target:  5'- gGGCCAgaguGCUCGgCGcGGAGUgc-GCGa -3'
miRNA:   3'- -UCGGUau--CGAGCaGC-CCUCAaguCGC- -5'
22279 5' -55.3 NC_005045.1 + 21165 0.67 0.555095
Target:  5'- cGGgCGUGGC---UCGGGAGUUCAuccGCGa -3'
miRNA:   3'- -UCgGUAUCGagcAGCCCUCAAGU---CGC- -5'
22279 5' -55.3 NC_005045.1 + 25823 0.68 0.522347
Target:  5'- aAGCUAc-GCUUGgccUGGGuGUUCAGCGg -3'
miRNA:   3'- -UCGGUauCGAGCa--GCCCuCAAGUCGC- -5'
22279 5' -55.3 NC_005045.1 + 6188 0.68 0.500935
Target:  5'- aGGCCGaGGCUCGUgagCGGGcGaaggCGGCGg -3'
miRNA:   3'- -UCGGUaUCGAGCA---GCCCuCaa--GUCGC- -5'
22279 5' -55.3 NC_005045.1 + 5098 0.69 0.469571
Target:  5'- gGGCgAUGGCuUCGUCGaGGGUUgCAGCc -3'
miRNA:   3'- -UCGgUAUCG-AGCAGCcCUCAA-GUCGc -5'
22279 5' -55.3 NC_005045.1 + 34637 0.69 0.45934
Target:  5'- cGGCgCAUGGCcccaacgaagUCacccaugCGGGAGUUCAGCa -3'
miRNA:   3'- -UCG-GUAUCG----------AGca-----GCCCUCAAGUCGc -5'
22279 5' -55.3 NC_005045.1 + 28591 0.7 0.391292
Target:  5'- uGGCCcUGGauaUCGagCGGGAGgUCGGCGa -3'
miRNA:   3'- -UCGGuAUCg--AGCa-GCCCUCaAGUCGC- -5'
22279 5' -55.3 NC_005045.1 + 28538 0.71 0.330162
Target:  5'- cGCCGaGGCUCagGcCGGGGcGUUCGGCGu -3'
miRNA:   3'- uCGGUaUCGAG--CaGCCCU-CAAGUCGC- -5'
22279 5' -55.3 NC_005045.1 + 33395 0.73 0.267183
Target:  5'- gGGCCGUcuuaucgacgacccAGUaCGUCGGGAuggGUUCAGCa -3'
miRNA:   3'- -UCGGUA--------------UCGaGCAGCCCU---CAAGUCGc -5'
22279 5' -55.3 NC_005045.1 + 41927 0.74 0.223724
Target:  5'- cAGCCAUcAGCUCGUCGaGGuGUgcgacCAGCu -3'
miRNA:   3'- -UCGGUA-UCGAGCAGC-CCuCAa----GUCGc -5'
22279 5' -55.3 NC_005045.1 + 33629 1.08 0.000804
Target:  5'- cAGCCAUAGCUCGUCGGGAGUUCAGCGc -3'
miRNA:   3'- -UCGGUAUCGAGCAGCCCUCAAGUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.