miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22280 3' -61.8 NC_005045.1 + 37523 0.66 0.33806
Target:  5'- aCCUucCGUccaguUGGCaUCGGCGGGCUGGa -3'
miRNA:   3'- cGGA--GCGacu--ACCG-AGCCGCCCGGUC- -5'
22280 3' -61.8 NC_005045.1 + 28490 0.66 0.330128
Target:  5'- gGCCUCGCaGGUGGa--GGCcaaGcGCCAGg -3'
miRNA:   3'- -CGGAGCGaCUACCgagCCGc--C-CGGUC- -5'
22280 3' -61.8 NC_005045.1 + 7284 0.66 0.330128
Target:  5'- uGCCagGUcaUGcgGGCgccguaGGCGGGCCGc -3'
miRNA:   3'- -CGGagCG--ACuaCCGag----CCGCCCGGUc -5'
22280 3' -61.8 NC_005045.1 + 6184 0.66 0.314679
Target:  5'- -gCUUGCUGAUgagccgacagacGGcCUCGGUcgGGGCCAc -3'
miRNA:   3'- cgGAGCGACUA------------CC-GAGCCG--CCCGGUc -5'
22280 3' -61.8 NC_005045.1 + 23662 0.66 0.307162
Target:  5'- gGCUUUGCcGAaGGCUCGGaCGGuauCCAGu -3'
miRNA:   3'- -CGGAGCGaCUaCCGAGCC-GCCc--GGUC- -5'
22280 3' -61.8 NC_005045.1 + 9008 0.66 0.299052
Target:  5'- cGCCggcuucaUCGCgucaaUGAccuGCUCGGCcuGGGCCAGg -3'
miRNA:   3'- -CGG-------AGCG-----ACUac-CGAGCCG--CCCGGUC- -5'
22280 3' -61.8 NC_005045.1 + 7099 0.66 0.299052
Target:  5'- cGCCUCGCggugGGUGGUgcuccagcccaagUCGGCGuagaacGGCUccAGg -3'
miRNA:   3'- -CGGAGCGa---CUACCG-------------AGCCGC------CCGG--UC- -5'
22280 3' -61.8 NC_005045.1 + 8631 0.67 0.264944
Target:  5'- gGCCUCgguGCUGGUGGCagCGccuccugauGCGGGCaAGa -3'
miRNA:   3'- -CGGAG---CGACUACCGa-GC---------CGCCCGgUC- -5'
22280 3' -61.8 NC_005045.1 + 18261 0.67 0.264944
Target:  5'- aCCUCGCaGucAUGGCgCuGCGGGCUGGg -3'
miRNA:   3'- cGGAGCGaC--UACCGaGcCGCCCGGUC- -5'
22280 3' -61.8 NC_005045.1 + 33069 0.67 0.258382
Target:  5'- cGCCUgCGCUaca-GCgaCGGUGGGCCGGg -3'
miRNA:   3'- -CGGA-GCGAcuacCGa-GCCGCCCGGUC- -5'
22280 3' -61.8 NC_005045.1 + 25947 0.67 0.258382
Target:  5'- -gCUCGCUGAgcUGGCcCGGCaGGCg-- -3'
miRNA:   3'- cgGAGCGACU--ACCGaGCCGcCCGguc -5'
22280 3' -61.8 NC_005045.1 + 33982 0.68 0.245036
Target:  5'- gGCCUgUGC-GAUGGUaUCGGCGucagcccgguccaGGCCAGg -3'
miRNA:   3'- -CGGA-GCGaCUACCG-AGCCGC-------------CCGGUC- -5'
22280 3' -61.8 NC_005045.1 + 39152 0.69 0.210589
Target:  5'- gGCUUC-CUGAUGcGCaUCuGGcCGGGCCGGu -3'
miRNA:   3'- -CGGAGcGACUAC-CG-AG-CC-GCCCGGUC- -5'
22280 3' -61.8 NC_005045.1 + 30568 0.69 0.210589
Target:  5'- cGCCUCGUcGAUGGUcgccCGGCGGacauGCuCAGa -3'
miRNA:   3'- -CGGAGCGaCUACCGa---GCCGCC----CG-GUC- -5'
22280 3' -61.8 NC_005045.1 + 7826 0.7 0.161733
Target:  5'- uGUCggCGCUGAaGGUgCGGUGGGCCu- -3'
miRNA:   3'- -CGGa-GCGACUaCCGaGCCGCCCGGuc -5'
22280 3' -61.8 NC_005045.1 + 28750 0.71 0.145219
Target:  5'- cCC-CGCUGGUGGCcggucugaugUCGGCGGGUUc- -3'
miRNA:   3'- cGGaGCGACUACCG----------AGCCGCCCGGuc -5'
22280 3' -61.8 NC_005045.1 + 15368 0.72 0.126748
Target:  5'- aGCCUCcccuGCUGGaaccGCUgCGGCGGGCCGu -3'
miRNA:   3'- -CGGAG----CGACUac--CGA-GCCGCCCGGUc -5'
22280 3' -61.8 NC_005045.1 + 39573 0.74 0.090954
Target:  5'- uGCCggCGCUGAUGGCUggaGGCuGGGCa-- -3'
miRNA:   3'- -CGGa-GCGACUACCGAg--CCG-CCCGguc -5'
22280 3' -61.8 NC_005045.1 + 33925 1.09 0.00017
Target:  5'- uGCCUCGCUGAUGGCUCGGCGGGCCAGc -3'
miRNA:   3'- -CGGAGCGACUACCGAGCCGCCCGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.