miRNA display CGI


Results 1 - 7 of 7 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22280 5' -52 NC_005045.1 + 14233 0.66 0.776856
Target:  5'- cGCCUCAaaUCCGcCUGGGCU-UCgcacugUGGGg -3'
miRNA:   3'- -CGGAGU--AGGUaGACUCGGuAGa-----ACCU- -5'
22280 5' -52 NC_005045.1 + 18617 0.66 0.797528
Target:  5'- gGCaCgagCGUCCAcCUgGAGCCGUCgccGGAg -3'
miRNA:   3'- -CG-Ga--GUAGGUaGA-CUCGGUAGaa-CCU- -5'
22280 5' -52 NC_005045.1 + 29535 0.66 0.776856
Target:  5'- gGCCUCuUCCAggCUGAGCUG-CcgGGAc -3'
miRNA:   3'- -CGGAGuAGGUa-GACUCGGUaGaaCCU- -5'
22280 5' -52 NC_005045.1 + 35338 0.67 0.766266
Target:  5'- aGCCgaugCCGUCgauGGCCAUCUUGcGGa -3'
miRNA:   3'- -CGGaguaGGUAGac-UCGGUAGAAC-CU- -5'
22280 5' -52 NC_005045.1 + 26929 0.67 0.766266
Target:  5'- aGCCUCAUCCcagCgcaGGGCCAg--UGGc -3'
miRNA:   3'- -CGGAGUAGGua-Ga--CUCGGUagaACCu -5'
22280 5' -52 NC_005045.1 + 15845 0.7 0.596496
Target:  5'- gGCCUCGUCC-UCguccGUCAUCgggUGGAg -3'
miRNA:   3'- -CGGAGUAGGuAGacu-CGGUAGa--ACCU- -5'
22280 5' -52 NC_005045.1 + 33889 1.11 0.001028
Target:  5'- gGCCUCAUCCAUCUGAGCCAUCUUGGAc -3'
miRNA:   3'- -CGGAGUAGGUAGACUCGGUAGAACCU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.