Results 1 - 13 of 13 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
22281 | 5' | -61.4 | NC_005045.1 | + | 13360 | 0.66 | 0.327834 |
Target: 5'- uCCUUGUCCCaGCGCUC-CUGUugGc- -3' miRNA: 3'- cGGGACAGGG-CGCGGGcGACGugUua -5' |
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22281 | 5' | -61.4 | NC_005045.1 | + | 41178 | 0.66 | 0.312288 |
Target: 5'- cGCCCgUGggcugaccggCCUGUGCCUGCUGCuguCGu- -3' miRNA: 3'- -CGGG-ACa---------GGGCGCGGGCGACGu--GUua -5' |
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22281 | 5' | -61.4 | NC_005045.1 | + | 34507 | 0.67 | 0.269034 |
Target: 5'- gGCgCUgGUCaggCCGCugGCCCGCUGUGCAAc -3' miRNA: 3'- -CGgGA-CAG---GGCG--CGGGCGACGUGUUa -5' |
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22281 | 5' | -61.4 | NC_005045.1 | + | 32421 | 0.67 | 0.262313 |
Target: 5'- cGUgCUGUCCCguauuaGCGCCCGCgugGaGCAGg -3' miRNA: 3'- -CGgGACAGGG------CGCGGGCGa--CgUGUUa -5' |
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22281 | 5' | -61.4 | NC_005045.1 | + | 2748 | 0.68 | 0.242969 |
Target: 5'- uGCCCUuggUCUGCGCCUGgaGCACc-- -3' miRNA: 3'- -CGGGAca-GGGCGCGGGCgaCGUGuua -5' |
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22281 | 5' | -61.4 | NC_005045.1 | + | 5316 | 0.68 | 0.236789 |
Target: 5'- gGUCUaUGUCCUcUGCCCGCUGCugGc- -3' miRNA: 3'- -CGGG-ACAGGGcGCGGGCGACGugUua -5' |
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22281 | 5' | -61.4 | NC_005045.1 | + | 9815 | 0.68 | 0.211707 |
Target: 5'- gGCCCgaccccgaaggcggCCCGCGCCUGggugcguacCUGCACAAg -3' miRNA: 3'- -CGGGaca-----------GGGCGCGGGC---------GACGUGUUa -5' |
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22281 | 5' | -61.4 | NC_005045.1 | + | 4466 | 0.7 | 0.161668 |
Target: 5'- gGCCCUGccaaggugaccggUCCGCGUCCcaccguGCUGCGCAAc -3' miRNA: 3'- -CGGGACa------------GGGCGCGGG------CGACGUGUUa -5' |
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22281 | 5' | -61.4 | NC_005045.1 | + | 41221 | 0.7 | 0.159058 |
Target: 5'- -gCCUGUgcaaccgcCCCgGCGCCCGCUGUGCu-- -3' miRNA: 3'- cgGGACA--------GGG-CGCGGGCGACGUGuua -5' |
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22281 | 5' | -61.4 | NC_005045.1 | + | 6534 | 0.71 | 0.150631 |
Target: 5'- aCCUUGUCCCagguCGCCCGCuugccgucgaUGCACGGg -3' miRNA: 3'- cGGGACAGGGc---GCGGGCG----------ACGUGUUa -5' |
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22281 | 5' | -61.4 | NC_005045.1 | + | 9432 | 0.73 | 0.093666 |
Target: 5'- gGCCCUGUUgCUGCGCCUGUacucugaUGCACGGc -3' miRNA: 3'- -CGGGACAG-GGCGCGGGCG-------ACGUGUUa -5' |
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22281 | 5' | -61.4 | NC_005045.1 | + | 22851 | 0.82 | 0.019707 |
Target: 5'- cGCCCUGUCCCGCuccgCCGCUGUGCAGa -3' miRNA: 3'- -CGGGACAGGGCGcg--GGCGACGUGUUa -5' |
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22281 | 5' | -61.4 | NC_005045.1 | + | 34009 | 1.07 | 0.000195 |
Target: 5'- aGCCCUGUCCCGCGCCCGCUGCACAAUg -3' miRNA: 3'- -CGGGACAGGGCGCGGGCGACGUGUUA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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