miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22281 5' -61.4 NC_005045.1 + 13360 0.66 0.327834
Target:  5'- uCCUUGUCCCaGCGCUC-CUGUugGc- -3'
miRNA:   3'- cGGGACAGGG-CGCGGGcGACGugUua -5'
22281 5' -61.4 NC_005045.1 + 41178 0.66 0.312288
Target:  5'- cGCCCgUGggcugaccggCCUGUGCCUGCUGCuguCGu- -3'
miRNA:   3'- -CGGG-ACa---------GGGCGCGGGCGACGu--GUua -5'
22281 5' -61.4 NC_005045.1 + 34507 0.67 0.269034
Target:  5'- gGCgCUgGUCaggCCGCugGCCCGCUGUGCAAc -3'
miRNA:   3'- -CGgGA-CAG---GGCG--CGGGCGACGUGUUa -5'
22281 5' -61.4 NC_005045.1 + 32421 0.67 0.262313
Target:  5'- cGUgCUGUCCCguauuaGCGCCCGCgugGaGCAGg -3'
miRNA:   3'- -CGgGACAGGG------CGCGGGCGa--CgUGUUa -5'
22281 5' -61.4 NC_005045.1 + 2748 0.68 0.242969
Target:  5'- uGCCCUuggUCUGCGCCUGgaGCACc-- -3'
miRNA:   3'- -CGGGAca-GGGCGCGGGCgaCGUGuua -5'
22281 5' -61.4 NC_005045.1 + 5316 0.68 0.236789
Target:  5'- gGUCUaUGUCCUcUGCCCGCUGCugGc- -3'
miRNA:   3'- -CGGG-ACAGGGcGCGGGCGACGugUua -5'
22281 5' -61.4 NC_005045.1 + 9815 0.68 0.211707
Target:  5'- gGCCCgaccccgaaggcggCCCGCGCCUGggugcguacCUGCACAAg -3'
miRNA:   3'- -CGGGaca-----------GGGCGCGGGC---------GACGUGUUa -5'
22281 5' -61.4 NC_005045.1 + 4466 0.7 0.161668
Target:  5'- gGCCCUGccaaggugaccggUCCGCGUCCcaccguGCUGCGCAAc -3'
miRNA:   3'- -CGGGACa------------GGGCGCGGG------CGACGUGUUa -5'
22281 5' -61.4 NC_005045.1 + 41221 0.7 0.159058
Target:  5'- -gCCUGUgcaaccgcCCCgGCGCCCGCUGUGCu-- -3'
miRNA:   3'- cgGGACA--------GGG-CGCGGGCGACGUGuua -5'
22281 5' -61.4 NC_005045.1 + 6534 0.71 0.150631
Target:  5'- aCCUUGUCCCagguCGCCCGCuugccgucgaUGCACGGg -3'
miRNA:   3'- cGGGACAGGGc---GCGGGCG----------ACGUGUUa -5'
22281 5' -61.4 NC_005045.1 + 9432 0.73 0.093666
Target:  5'- gGCCCUGUUgCUGCGCCUGUacucugaUGCACGGc -3'
miRNA:   3'- -CGGGACAG-GGCGCGGGCG-------ACGUGUUa -5'
22281 5' -61.4 NC_005045.1 + 22851 0.82 0.019707
Target:  5'- cGCCCUGUCCCGCuccgCCGCUGUGCAGa -3'
miRNA:   3'- -CGGGACAGGGCGcg--GGCGACGUGUUa -5'
22281 5' -61.4 NC_005045.1 + 34009 1.07 0.000195
Target:  5'- aGCCCUGUCCCGCGCCCGCUGCACAAUg -3'
miRNA:   3'- -CGGGACAGGGCGCGGGCGACGUGUUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.