Results 1 - 12 of 12 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22282 | 3' | -56.1 | NC_005045.1 | + | 148 | 0.67 | 0.541688 |
Target: 5'- cCUGCggUGGCGUGGcugC-CCAUCGGCUc -3' miRNA: 3'- -GACG--GCCGCAUCaa-GaGGUAGUCGGc -5' |
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22282 | 3' | -56.1 | NC_005045.1 | + | 6106 | 0.66 | 0.584524 |
Target: 5'- -gGCCGGCcc-GUUgaccuacCUCCAcCAGCCGg -3' miRNA: 3'- gaCGGCCGcauCAA-------GAGGUaGUCGGC- -5' |
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22282 | 3' | -56.1 | NC_005045.1 | + | 8598 | 0.7 | 0.362516 |
Target: 5'- gCUGCCGGCGUacaugaaGGgcCUCCAc--GCCGg -3' miRNA: 3'- -GACGGCCGCA-------UCaaGAGGUaguCGGC- -5' |
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22282 | 3' | -56.1 | NC_005045.1 | + | 10116 | 0.66 | 0.596741 |
Target: 5'- -cGCaUGGCGUGGUg-UCCcgCAGCgGg -3' miRNA: 3'- gaCG-GCCGCAUCAagAGGuaGUCGgC- -5' |
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22282 | 3' | -56.1 | NC_005045.1 | + | 10429 | 0.66 | 0.595628 |
Target: 5'- uUGCCGGCGgGGcgacaccccguacUUCuUCCAggUAGCCGc -3' miRNA: 3'- gACGGCCGCaUC-------------AAG-AGGUa-GUCGGC- -5' |
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22282 | 3' | -56.1 | NC_005045.1 | + | 21570 | 0.68 | 0.488428 |
Target: 5'- gUGCCGGUGcAGUgg--CAUCGGCCa -3' miRNA: 3'- gACGGCCGCaUCAagagGUAGUCGGc -5' |
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22282 | 3' | -56.1 | NC_005045.1 | + | 22292 | 0.68 | 0.478065 |
Target: 5'- -aGCuCGGCGUA---CUCCAUC-GCCGu -3' miRNA: 3'- gaCG-GCCGCAUcaaGAGGUAGuCGGC- -5' |
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22282 | 3' | -56.1 | NC_005045.1 | + | 23531 | 0.67 | 0.496794 |
Target: 5'- -gGCCGGCGgcggcgggacuuccaGGUUCUcgggaagaacugcaCCcgCAGCCGg -3' miRNA: 3'- gaCGGCCGCa--------------UCAAGA--------------GGuaGUCGGC- -5' |
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22282 | 3' | -56.1 | NC_005045.1 | + | 30256 | 0.75 | 0.170676 |
Target: 5'- uUGCCGGCGgaggGGUugaUCUCC-UgGGCCGa -3' miRNA: 3'- gACGGCCGCa---UCA---AGAGGuAgUCGGC- -5' |
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22282 | 3' | -56.1 | NC_005045.1 | + | 34285 | 1.1 | 0.000486 |
Target: 5'- aCUGCCGGCGUAGUUCUCCAUCAGCCGg -3' miRNA: 3'- -GACGGCCGCAUCAAGAGGUAGUCGGC- -5' |
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22282 | 3' | -56.1 | NC_005045.1 | + | 40066 | 0.67 | 0.519049 |
Target: 5'- aCUGCUGGCaggacacGUGGUcggaaUCCAUC-GCCGa -3' miRNA: 3'- -GACGGCCG-------CAUCAag---AGGUAGuCGGC- -5' |
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22282 | 3' | -56.1 | NC_005045.1 | + | 42211 | 0.67 | 0.541688 |
Target: 5'- cCUGCggUGGCGUGGcugC-CCAUCGGCUc -3' miRNA: 3'- -GACG--GCCGCAUCaa-GaGGUAGUCGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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