miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22283 3' -52.8 NC_005045.1 + 16745 0.66 0.802959
Target:  5'- cGUUGcccACgGCGCCGGGGAAcUUCCGGa -3'
miRNA:   3'- -CGACua-UG-UGCGGCCUCUU-AGGGUCg -5'
22283 3' -52.8 NC_005045.1 + 12382 0.66 0.792975
Target:  5'- gGUUGAU-CAgGCCGGGGAA--CCGGa -3'
miRNA:   3'- -CGACUAuGUgCGGCCUCUUagGGUCg -5'
22283 3' -52.8 NC_005045.1 + 40655 0.66 0.772483
Target:  5'- -aUGGUGggUACGCCGGcGAuGUCUCGGUa -3'
miRNA:   3'- cgACUAU--GUGCGGCCuCU-UAGGGUCG- -5'
22283 3' -52.8 NC_005045.1 + 1357 0.66 0.772483
Target:  5'- aGCUGcaACugGUUaGGcAGggUCCCAGg -3'
miRNA:   3'- -CGACuaUGugCGG-CC-UCuuAGGGUCg -5'
22283 3' -52.8 NC_005045.1 + 21257 0.67 0.751371
Target:  5'- aGCcGGUACACGauccacuaCCGGAGAG-CCaAGCc -3'
miRNA:   3'- -CGaCUAUGUGC--------GGCCUCUUaGGgUCG- -5'
22283 3' -52.8 NC_005045.1 + 28108 0.67 0.751371
Target:  5'- cGCUGAUGCGCcacaggaacucGCCGG-----UCCAGCc -3'
miRNA:   3'- -CGACUAUGUG-----------CGGCCucuuaGGGUCG- -5'
22283 3' -52.8 NC_005045.1 + 13237 0.67 0.729743
Target:  5'- gGCgccaGUAC-CGCCGG-GGAUUCUGGCa -3'
miRNA:   3'- -CGac--UAUGuGCGGCCuCUUAGGGUCG- -5'
22283 3' -52.8 NC_005045.1 + 8891 0.67 0.72646
Target:  5'- aGCUGAU-C-CGCaucaaggacuuccaCGGGGggUCCCuGGCc -3'
miRNA:   3'- -CGACUAuGuGCG--------------GCCUCuuAGGG-UCG- -5'
22283 3' -52.8 NC_005045.1 + 34218 0.67 0.718766
Target:  5'- gGCUGAUGgagaacUACGCCGGcaguaugucGGGccgCUCAGCa -3'
miRNA:   3'- -CGACUAU------GUGCGGCC---------UCUua-GGGUCG- -5'
22283 3' -52.8 NC_005045.1 + 14185 0.68 0.662757
Target:  5'- aGCUGGgugacCACGCCaaGGAAUUCCAGg -3'
miRNA:   3'- -CGACUau---GUGCGGccUCUUAGGGUCg -5'
22283 3' -52.8 NC_005045.1 + 30890 0.68 0.651416
Target:  5'- cCUGGaccGCACGCgGGuuGAUCCCcaGGCa -3'
miRNA:   3'- cGACUa--UGUGCGgCCucUUAGGG--UCG- -5'
22283 3' -52.8 NC_005045.1 + 11200 0.69 0.617324
Target:  5'- uGCUGGaGCAUGCCG-----UCCCGGCc -3'
miRNA:   3'- -CGACUaUGUGCGGCcucuuAGGGUCG- -5'
22283 3' -52.8 NC_005045.1 + 31958 0.72 0.417622
Target:  5'- gGCUgGAUACcugcCGCCuGGAGcgccuggaccccauaGGUCCCAGCg -3'
miRNA:   3'- -CGA-CUAUGu---GCGG-CCUC---------------UUAGGGUCG- -5'
22283 3' -52.8 NC_005045.1 + 37575 0.73 0.404137
Target:  5'- aGCuUGAUcuccagcucACGuccUGCCGGAGucUCCCAGCg -3'
miRNA:   3'- -CG-ACUA---------UGU---GCGGCCUCuuAGGGUCG- -5'
22283 3' -52.8 NC_005045.1 + 27848 0.73 0.393737
Target:  5'- aGCUGAUACACGgCaGAGGcauccuugaucagGUCCCAauGCu -3'
miRNA:   3'- -CGACUAUGUGCgGcCUCU-------------UAGGGU--CG- -5'
22283 3' -52.8 NC_005045.1 + 19467 0.75 0.29281
Target:  5'- gGCgaggGCGCGCUGGaAGucGUCCCAGCg -3'
miRNA:   3'- -CGacuaUGUGCGGCC-UCu-UAGGGUCG- -5'
22283 3' -52.8 NC_005045.1 + 34538 1.05 0.002789
Target:  5'- aGC-GAUACACGCCGGAGAAUCCCAGCa -3'
miRNA:   3'- -CGaCUAUGUGCGGCCUCUUAGGGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.