miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22283 5' -63.1 NC_005045.1 + 3858 0.66 0.267627
Target:  5'- gGGUCAGGCguccUGCggacaauaccggcgGGCaCCGCgaacUGUGCGg -3'
miRNA:   3'- aCCAGUCCG----GCGa-------------CCG-GGCG----ACACGU- -5'
22283 5' -63.1 NC_005045.1 + 41734 0.66 0.251922
Target:  5'- uUGGaCGGGCUgaaGCUcaGCCCGCcgGUGCGg -3'
miRNA:   3'- -ACCaGUCCGG---CGAc-CGGGCGa-CACGU- -5'
22283 5' -63.1 NC_005045.1 + 33837 0.66 0.245606
Target:  5'- aUGGaUgAGGCCGCcccugggcUGGCCCGCcGaGCc -3'
miRNA:   3'- -ACC-AgUCCGGCG--------ACCGGGCGaCaCGu -5'
22283 5' -63.1 NC_005045.1 + 28693 0.67 0.221646
Target:  5'- aGGcUCAGGCUaagGCcGGCCUGCUGgGUc -3'
miRNA:   3'- aCC-AGUCCGG---CGaCCGGGCGACaCGu -5'
22283 5' -63.1 NC_005045.1 + 31799 0.68 0.184026
Target:  5'- cGGUCaaGGGCCGgcaguucCUGGUCCGCUacgaUGCGu -3'
miRNA:   3'- aCCAG--UCCGGC-------GACCGGGCGAc---ACGU- -5'
22283 5' -63.1 NC_005045.1 + 6954 0.69 0.161458
Target:  5'- cUGGUaCGGGCCGCcGaGCUgGCUGgUGCc -3'
miRNA:   3'- -ACCA-GUCCGGCGaC-CGGgCGAC-ACGu -5'
22283 5' -63.1 NC_005045.1 + 22276 0.7 0.133542
Target:  5'- gUGGgcaaggaGGGCCGCUGGCCUauccacCUGUGUc -3'
miRNA:   3'- -ACCag-----UCCGGCGACCGGGc-----GACACGu -5'
22283 5' -63.1 NC_005045.1 + 34245 0.71 0.106822
Target:  5'- -uGUCGGGCCGCucagcauUGGCCCGCgcagGUAu -3'
miRNA:   3'- acCAGUCCGGCG-------ACCGGGCGaca-CGU- -5'
22283 5' -63.1 NC_005045.1 + 2846 0.72 0.087611
Target:  5'- cGG-CGGGCCGCUGcaacgcaGCCgacauggCGCUGUGCGa -3'
miRNA:   3'- aCCaGUCCGGCGAC-------CGG-------GCGACACGU- -5'
22283 5' -63.1 NC_005045.1 + 34503 1.08 0.000127
Target:  5'- cUGGUCAGGCCGCUGGCCCGCUGUGCAa -3'
miRNA:   3'- -ACCAGUCCGGCGACCGGGCGACACGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.