miRNA display CGI


Results 1 - 20 of 32 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22285 3' -64.8 NC_005045.1 + 4744 0.68 0.143608
Target:  5'- cGCCCGGGGUagcaGCGGUGguG-GUUUCGg -3'
miRNA:   3'- uCGGGUCCCG----UGCCGCguCgCGGAGU- -5'
22285 3' -64.8 NC_005045.1 + 5468 0.7 0.095396
Target:  5'- uGCCUuGcGaGCGCGGCGCucuuGUGCCUCGu -3'
miRNA:   3'- uCGGGuC-C-CGUGCCGCGu---CGCGGAGU- -5'
22285 3' -64.8 NC_005045.1 + 7371 0.73 0.057694
Target:  5'- uAG-CCAGGaGuCACGGCGCAGUGCCa-- -3'
miRNA:   3'- -UCgGGUCC-C-GUGCCGCGUCGCGGagu -5'
22285 3' -64.8 NC_005045.1 + 8547 0.67 0.159816
Target:  5'- -cCCCu---CACGGCGCAGgGCCUCGu -3'
miRNA:   3'- ucGGGucccGUGCCGCGUCgCGGAGU- -5'
22285 3' -64.8 NC_005045.1 + 8616 0.71 0.089762
Target:  5'- gGGCCUccacgccGGGGCcuCGGUgcuggugGCAGCGCCUCc -3'
miRNA:   3'- -UCGGG-------UCCCGu-GCCG-------CGUCGCGGAGu -5'
22285 3' -64.8 NC_005045.1 + 9049 0.66 0.218691
Target:  5'- uGGCCgAGGuccGCgagAUGGCGguGCGCCa-- -3'
miRNA:   3'- -UCGGgUCC---CG---UGCCGCguCGCGGagu -5'
22285 3' -64.8 NC_005045.1 + 10205 0.74 0.046007
Target:  5'- cGUCCAGGGCAgGGaaGCGGCGCC-CGc -3'
miRNA:   3'- uCGGGUCCCGUgCCg-CGUCGCGGaGU- -5'
22285 3' -64.8 NC_005045.1 + 10575 0.67 0.170317
Target:  5'- aAGCCCAuGGCGCGGUgguagccguaccagcGUAGUaccGCCUCc -3'
miRNA:   3'- -UCGGGUcCCGUGCCG---------------CGUCG---CGGAGu -5'
22285 3' -64.8 NC_005045.1 + 13629 0.68 0.132453
Target:  5'- uAGCCCAGGcGCucgcucauguaGCGG-GCAGCGUCg-- -3'
miRNA:   3'- -UCGGGUCC-CG-----------UGCCgCGUCGCGGagu -5'
22285 3' -64.8 NC_005045.1 + 16750 0.66 0.213149
Target:  5'- cGCCUaucgAGGGCugGGUGUGGuCGCuCUgGa -3'
miRNA:   3'- uCGGG----UCCCGugCCGCGUC-GCG-GAgU- -5'
22285 3' -64.8 NC_005045.1 + 17896 0.66 0.218131
Target:  5'- cAGCCuccucgguCAGGGCcaccuCGGCgGCGGCcauugcauugaacGCCUCAu -3'
miRNA:   3'- -UCGG--------GUCCCGu----GCCG-CGUCG-------------CGGAGU- -5'
22285 3' -64.8 NC_005045.1 + 17981 0.67 0.182385
Target:  5'- -uUCCAGGGUgGCGGCGCGguauucGCGCCa-- -3'
miRNA:   3'- ucGGGUCCCG-UGCCGCGU------CGCGGagu -5'
22285 3' -64.8 NC_005045.1 + 18051 0.66 0.202428
Target:  5'- aGGCCCuugucGGgGCGGCGCAGaacgaCGCCcgCAu -3'
miRNA:   3'- -UCGGGuc---CCgUGCCGCGUC-----GCGGa-GU- -5'
22285 3' -64.8 NC_005045.1 + 18779 0.66 0.213149
Target:  5'- -uUCCAGGGuCGCGGCG--GCGCCa-- -3'
miRNA:   3'- ucGGGUCCC-GUGCCGCguCGCGGagu -5'
22285 3' -64.8 NC_005045.1 + 18896 0.69 0.122102
Target:  5'- uGGCCCAGGugGCGGaGCuGCGCCUg- -3'
miRNA:   3'- -UCGGGUCCcgUGCCgCGuCGCGGAgu -5'
22285 3' -64.8 NC_005045.1 + 23266 0.71 0.090261
Target:  5'- uGGUUCGGGGU-CGGCGCGGCaGCCg-- -3'
miRNA:   3'- -UCGGGUCCCGuGCCGCGUCG-CGGagu -5'
22285 3' -64.8 NC_005045.1 + 24007 0.67 0.182385
Target:  5'- -aCCCAGGGguUGGC-CGGCuGCCUg- -3'
miRNA:   3'- ucGGGUCCCguGCCGcGUCG-CGGAgu -5'
22285 3' -64.8 NC_005045.1 + 27382 0.66 0.197245
Target:  5'- -aCCCAGGGCACGcucCGCAGCGa---- -3'
miRNA:   3'- ucGGGUCCCGUGCc--GCGUCGCggagu -5'
22285 3' -64.8 NC_005045.1 + 30295 0.7 0.106505
Target:  5'- cGGCCCAGGcccuGCGCGaGUuCAGCGCCa-- -3'
miRNA:   3'- -UCGGGUCC----CGUGC-CGcGUCGCGGagu -5'
22285 3' -64.8 NC_005045.1 + 30308 0.74 0.048692
Target:  5'- cGCCCAGGcCACGGCGCccuGCucgGCCUCc -3'
miRNA:   3'- uCGGGUCCcGUGCCGCGu--CG---CGGAGu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.