miRNA display CGI


Results 1 - 7 of 7 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22285 5' -57 NC_005045.1 + 66 0.66 0.487499
Target:  5'- -cUGGGaGCUUCCggcuucGCCGGGUGGCg -3'
miRNA:   3'- caGCUCaCGAAGGaca---CGGUCCGCUG- -5'
22285 5' -57 NC_005045.1 + 42129 0.66 0.487499
Target:  5'- -cUGGGaGCUUCCggcuucGCCGGGUGGCg -3'
miRNA:   3'- caGCUCaCGAAGGaca---CGGUCCGCUG- -5'
22285 5' -57 NC_005045.1 + 31286 0.67 0.477102
Target:  5'- gGUCGAGUGCgcggUCgGUGUCcucGGCGAa -3'
miRNA:   3'- -CAGCUCACGaa--GGaCACGGu--CCGCUg -5'
22285 5' -57 NC_005045.1 + 15664 0.7 0.304526
Target:  5'- gGUCGgaAGUuCUUCCUGgcgcagugGCUGGGCGGCg -3'
miRNA:   3'- -CAGC--UCAcGAAGGACa-------CGGUCCGCUG- -5'
22285 5' -57 NC_005045.1 + 5749 0.72 0.210954
Target:  5'- -gCGGGUaGCggccagCUUGUGCCAGGcCGACg -3'
miRNA:   3'- caGCUCA-CGaa----GGACACGGUCC-GCUG- -5'
22285 5' -57 NC_005045.1 + 12948 0.73 0.199811
Target:  5'- aGUUGuuGUGCUUCCc-UGCCAGGCGGu -3'
miRNA:   3'- -CAGCu-CACGAAGGacACGGUCCGCUg -5'
22285 5' -57 NC_005045.1 + 35989 1.1 0.000336
Target:  5'- cGUCGAGUGCUUCCUGUGCCAGGCGACg -3'
miRNA:   3'- -CAGCUCACGAAGGACACGGUCCGCUG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.