miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22287 5' -56.2 NC_005045.1 + 14166 0.66 0.585633
Target:  5'- cGCCGGUGgaGGUuucGGACAUG-UCGa- -3'
miRNA:   3'- aCGGCCACggCCG---CUUGUACaAGCag -5'
22287 5' -56.2 NC_005045.1 + 33308 0.66 0.574566
Target:  5'- cGCCcgugaaGGUGCUGGCuucguGAACcgGUUCuUCa -3'
miRNA:   3'- aCGG------CCACGGCCG-----CUUGuaCAAGcAG- -5'
22287 5' -56.2 NC_005045.1 + 21062 0.66 0.574566
Target:  5'- gGCCaGUugGCCGGCGGcgccugcauCGUGUUCGa- -3'
miRNA:   3'- aCGGcCA--CGGCCGCUu--------GUACAAGCag -5'
22287 5' -56.2 NC_005045.1 + 31035 0.66 0.563547
Target:  5'- gUGCCGGcaUGCUGaaGCaGGACGUGUUCa-- -3'
miRNA:   3'- -ACGGCC--ACGGC--CG-CUUGUACAAGcag -5'
22287 5' -56.2 NC_005045.1 + 27810 0.67 0.530864
Target:  5'- aGCCcGUgGCCGGCGccuACAUGgagCGUa -3'
miRNA:   3'- aCGGcCA-CGGCCGCu--UGUACaa-GCAg -5'
22287 5' -56.2 NC_005045.1 + 19150 0.67 0.488428
Target:  5'- cGCCGGUGUaccauCGGUGGACGgag-CGUUu -3'
miRNA:   3'- aCGGCCACG-----GCCGCUUGUacaaGCAG- -5'
22287 5' -56.2 NC_005045.1 + 8584 0.68 0.478065
Target:  5'- uUGCCGGggcuggugcUGCCGGCGuACAUGa----- -3'
miRNA:   3'- -ACGGCC---------ACGGCCGCuUGUACaagcag -5'
22287 5' -56.2 NC_005045.1 + 2267 0.68 0.467812
Target:  5'- gGCCaGGUaGCCGGCacuGCGUGgagUgGUCa -3'
miRNA:   3'- aCGG-CCA-CGGCCGcu-UGUACa--AgCAG- -5'
22287 5' -56.2 NC_005045.1 + 26436 0.68 0.457673
Target:  5'- gGuuGGUGCUGGCGu---UGUccggCGUCa -3'
miRNA:   3'- aCggCCACGGCCGCuuguACAa---GCAG- -5'
22287 5' -56.2 NC_005045.1 + 12720 0.68 0.447654
Target:  5'- aGCCGGcaGCCGcGUGAaggAgAUGUUCGUg -3'
miRNA:   3'- aCGGCCa-CGGC-CGCU---UgUACAAGCAg -5'
22287 5' -56.2 NC_005045.1 + 40404 0.69 0.390235
Target:  5'- cGCCGGUGaCGGCGAGgGUGccUUUGcCc -3'
miRNA:   3'- aCGGCCACgGCCGCUUgUAC--AAGCaG- -5'
22287 5' -56.2 NC_005045.1 + 36868 0.69 0.390235
Target:  5'- aG-CGGagGCUGGaCGAACAUGUUCGcCg -3'
miRNA:   3'- aCgGCCa-CGGCC-GCUUGUACAAGCaG- -5'
22287 5' -56.2 NC_005045.1 + 35497 0.73 0.236202
Target:  5'- cGCCGGUGgCGGCu-GCGgggUCGUCg -3'
miRNA:   3'- aCGGCCACgGCCGcuUGUacaAGCAG- -5'
22287 5' -56.2 NC_005045.1 + 36851 0.78 0.108729
Target:  5'- gUGCaGGUGCUGGCGGACG-GUUcCGUCa -3'
miRNA:   3'- -ACGgCCACGGCCGCUUGUaCAA-GCAG- -5'
22287 5' -56.2 NC_005045.1 + 36946 1.09 0.000601
Target:  5'- uUGCCGGUGCCGGCGAACAUGUUCGUCc -3'
miRNA:   3'- -ACGGCCACGGCCGCUUGUACAAGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.