miRNA display CGI

Results 1 - 10 of 10 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
22288	3'	-52.2	NC_005045.1	+	6285	0.66	0.840114
	Target:  5'- uGCUGCCUGccagguguccuuaGCCGccgCCUucgcccgcucacgaGCCUCGGc -3' miRNA:   3'- cUGAUGGAC-------------UGGCuaaGGA--------------UGGAGCC- -5'
22288	3'	-52.2	NC_005045.1	+	30447	0.66	0.806126
	Target:  5'- -cCUGCUUG-CCGAgguugUCCUugaauGCCUUGGu -3' miRNA:   3'- cuGAUGGACuGGCUa----AGGA-----UGGAGCC- -5'
22288	3'	-52.2	NC_005045.1	+	39171	0.67	0.796216
	Target:  5'- ---gGCCgGGCCGGUUCCcgACCcUGGa -3' miRNA:   3'- cugaUGGaCUGGCUAAGGa-UGGaGCC- -5'
22288	3'	-52.2	NC_005045.1	+	9949	0.67	0.765441
	Target:  5'- aGACgugaGCCUGcACCGAcUUCCUugUUCa- -3' miRNA:   3'- -CUGa---UGGAC-UGGCU-AAGGAugGAGcc -5'
22288	3'	-52.2	NC_005045.1	+	11515	0.68	0.733356
	Target:  5'- cGAgUACCUGGCC--UUCCUGCgacgCGGu -3' miRNA:   3'- -CUgAUGGACUGGcuAAGGAUGga--GCC- -5'
22288	3'	-52.2	NC_005045.1	+	2213	0.72	0.50988
	Target:  5'- cGGCUACCUGGCCGccgcugCUUACCUg-- -3' miRNA:   3'- -CUGAUGGACUGGCuaa---GGAUGGAgcc -5'
22288	3'	-52.2	NC_005045.1	+	25985	0.72	0.477982
	Target:  5'- cGACcagcCCUGGCCGAggccgUUCCUcuaccacacgaACCUCGGu -3' miRNA:   3'- -CUGau--GGACUGGCU-----AAGGA-----------UGGAGCC- -5'
22288	3'	-52.2	NC_005045.1	+	6851	0.74	0.379643
	Target:  5'- cGACcuguccgGCCUGAUgguaGGUUCCUGCCUCGu -3' miRNA:   3'- -CUGa------UGGACUGg---CUAAGGAUGGAGCc -5'
22288	3'	-52.2	NC_005045.1	+	16522	0.74	0.36166
	Target:  5'- aGC-ACCUGACCGAgcaaUCCcGCUUCGGu -3' miRNA:   3'- cUGaUGGACUGGCUa---AGGaUGGAGCC- -5'
22288	3'	-52.2	NC_005045.1	+	37137	1.1	0.001399
	Target:  5'- aGACUACCUGACCGAUUCCUACCUCGGc -3' miRNA:   3'- -CUGAUGGACUGGCUAAGGAUGGAGCC- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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