Results 1 - 10 of 10 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
22288 | 3' | -52.2 | NC_005045.1 | + | 6285 | 0.66 | 0.840114 |
Target: 5'- uGCUGCCUGccagguguccuuaGCCGccgCCUucgcccgcucacgaGCCUCGGc -3' miRNA: 3'- cUGAUGGAC-------------UGGCuaaGGA--------------UGGAGCC- -5' |
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22288 | 3' | -52.2 | NC_005045.1 | + | 30447 | 0.66 | 0.806126 |
Target: 5'- -cCUGCUUG-CCGAgguugUCCUugaauGCCUUGGu -3' miRNA: 3'- cuGAUGGACuGGCUa----AGGA-----UGGAGCC- -5' |
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22288 | 3' | -52.2 | NC_005045.1 | + | 39171 | 0.67 | 0.796216 |
Target: 5'- ---gGCCgGGCCGGUUCCcgACCcUGGa -3' miRNA: 3'- cugaUGGaCUGGCUAAGGa-UGGaGCC- -5' |
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22288 | 3' | -52.2 | NC_005045.1 | + | 9949 | 0.67 | 0.765441 |
Target: 5'- aGACgugaGCCUGcACCGAcUUCCUugUUCa- -3' miRNA: 3'- -CUGa---UGGAC-UGGCU-AAGGAugGAGcc -5' |
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22288 | 3' | -52.2 | NC_005045.1 | + | 11515 | 0.68 | 0.733356 |
Target: 5'- cGAgUACCUGGCC--UUCCUGCgacgCGGu -3' miRNA: 3'- -CUgAUGGACUGGcuAAGGAUGga--GCC- -5' |
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22288 | 3' | -52.2 | NC_005045.1 | + | 2213 | 0.72 | 0.50988 |
Target: 5'- cGGCUACCUGGCCGccgcugCUUACCUg-- -3' miRNA: 3'- -CUGAUGGACUGGCuaa---GGAUGGAgcc -5' |
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22288 | 3' | -52.2 | NC_005045.1 | + | 25985 | 0.72 | 0.477982 |
Target: 5'- cGACcagcCCUGGCCGAggccgUUCCUcuaccacacgaACCUCGGu -3' miRNA: 3'- -CUGau--GGACUGGCU-----AAGGA-----------UGGAGCC- -5' |
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22288 | 3' | -52.2 | NC_005045.1 | + | 6851 | 0.74 | 0.379643 |
Target: 5'- cGACcuguccgGCCUGAUgguaGGUUCCUGCCUCGu -3' miRNA: 3'- -CUGa------UGGACUGg---CUAAGGAUGGAGCc -5' |
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22288 | 3' | -52.2 | NC_005045.1 | + | 16522 | 0.74 | 0.36166 |
Target: 5'- aGC-ACCUGACCGAgcaaUCCcGCUUCGGu -3' miRNA: 3'- cUGaUGGACUGGCUa---AGGaUGGAGCC- -5' |
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22288 | 3' | -52.2 | NC_005045.1 | + | 37137 | 1.1 | 0.001399 |
Target: 5'- aGACUACCUGACCGAUUCCUACCUCGGc -3' miRNA: 3'- -CUGAUGGACUGGCUAAGGAUGGAGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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