miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22288 5' -55.1 NC_005045.1 + 32189 0.66 0.648435
Target:  5'- gGGCCgacgUGGAugccGGAACCUacauCGUGGcGGg -3'
miRNA:   3'- -CCGGa---ACCUu---CCUUGGAc---GCGCCuUC- -5'
22288 5' -55.1 NC_005045.1 + 10349 0.66 0.614731
Target:  5'- cGGCCUUGGucagcGGggUCU-UGCGGGc- -3'
miRNA:   3'- -CCGGAACCuu---CCuuGGAcGCGCCUuc -5'
22288 5' -55.1 NC_005045.1 + 7277 0.66 0.613609
Target:  5'- cGGCCUuugUGGGAGGAAUgguaccaauggcaCUGCGcCGuGAc- -3'
miRNA:   3'- -CCGGA---ACCUUCCUUG-------------GACGC-GC-CUuc -5'
22288 5' -55.1 NC_005045.1 + 19697 0.67 0.603515
Target:  5'- aGUCUcUGGAGaGAgaccgagcGCCUgGCGCGGAAGg -3'
miRNA:   3'- cCGGA-ACCUUcCU--------UGGA-CGCGCCUUC- -5'
22288 5' -55.1 NC_005045.1 + 28489 0.67 0.591207
Target:  5'- uGGCCUcgcaggUGGAggccaagcgccagGGGAugCUaGCcgGCGGAAGc -3'
miRNA:   3'- -CCGGA------ACCU-------------UCCUugGA-CG--CGCCUUC- -5'
22288 5' -55.1 NC_005045.1 + 28751 0.67 0.558997
Target:  5'- cGGCCUuagccugagccUGGAuGGAgugcGCCUGCuCGGcGAGg -3'
miRNA:   3'- -CCGGA-----------ACCUuCCU----UGGACGcGCC-UUC- -5'
22288 5' -55.1 NC_005045.1 + 41023 0.68 0.541433
Target:  5'- gGGCCUUGGGuaucgcccaggGGGAgaucaagcggcagacGgCCcGUGCGGAGGc -3'
miRNA:   3'- -CCGGAACCU-----------UCCU---------------U-GGaCGCGCCUUC- -5'
22288 5' -55.1 NC_005045.1 + 20554 0.68 0.526217
Target:  5'- gGGCCUUGGAcGGAugcACUUGCuccuauGUGGGu- -3'
miRNA:   3'- -CCGGAACCUuCCU---UGGACG------CGCCUuc -5'
22288 5' -55.1 NC_005045.1 + 38828 0.69 0.479545
Target:  5'- cGGCCUUGucaccGGAACCggauaccagcaugGCGCGGGu- -3'
miRNA:   3'- -CCGGAACcuu--CCUUGGa------------CGCGCCUuc -5'
22288 5' -55.1 NC_005045.1 + 20198 0.71 0.376498
Target:  5'- uGGCCU-GGAcagcagccaccuGGGAcugaccgcccugGCCUGCgcaGCGGAGGa -3'
miRNA:   3'- -CCGGAaCCU------------UCCU------------UGGACG---CGCCUUC- -5'
22288 5' -55.1 NC_005045.1 + 8979 0.72 0.317131
Target:  5'- cGGCC-UGGGccAGGGACCcccCGUGGAAGu -3'
miRNA:   3'- -CCGGaACCU--UCCUUGGac-GCGCCUUC- -5'
22288 5' -55.1 NC_005045.1 + 37102 1.11 0.000489
Target:  5'- uGGCCUUGGAAGGAACCUGCGCGGAAGg -3'
miRNA:   3'- -CCGGAACCUUCCUUGGACGCGCCUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.