Results 1 - 12 of 12 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
22288 | 5' | -55.1 | NC_005045.1 | + | 32189 | 0.66 | 0.648435 |
Target: 5'- gGGCCgacgUGGAugccGGAACCUacauCGUGGcGGg -3' miRNA: 3'- -CCGGa---ACCUu---CCUUGGAc---GCGCCuUC- -5' |
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22288 | 5' | -55.1 | NC_005045.1 | + | 10349 | 0.66 | 0.614731 |
Target: 5'- cGGCCUUGGucagcGGggUCU-UGCGGGc- -3' miRNA: 3'- -CCGGAACCuu---CCuuGGAcGCGCCUuc -5' |
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22288 | 5' | -55.1 | NC_005045.1 | + | 7277 | 0.66 | 0.613609 |
Target: 5'- cGGCCUuugUGGGAGGAAUgguaccaauggcaCUGCGcCGuGAc- -3' miRNA: 3'- -CCGGA---ACCUUCCUUG-------------GACGC-GC-CUuc -5' |
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22288 | 5' | -55.1 | NC_005045.1 | + | 19697 | 0.67 | 0.603515 |
Target: 5'- aGUCUcUGGAGaGAgaccgagcGCCUgGCGCGGAAGg -3' miRNA: 3'- cCGGA-ACCUUcCU--------UGGA-CGCGCCUUC- -5' |
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22288 | 5' | -55.1 | NC_005045.1 | + | 28489 | 0.67 | 0.591207 |
Target: 5'- uGGCCUcgcaggUGGAggccaagcgccagGGGAugCUaGCcgGCGGAAGc -3' miRNA: 3'- -CCGGA------ACCU-------------UCCUugGA-CG--CGCCUUC- -5' |
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22288 | 5' | -55.1 | NC_005045.1 | + | 28751 | 0.67 | 0.558997 |
Target: 5'- cGGCCUuagccugagccUGGAuGGAgugcGCCUGCuCGGcGAGg -3' miRNA: 3'- -CCGGA-----------ACCUuCCU----UGGACGcGCC-UUC- -5' |
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22288 | 5' | -55.1 | NC_005045.1 | + | 41023 | 0.68 | 0.541433 |
Target: 5'- gGGCCUUGGGuaucgcccaggGGGAgaucaagcggcagacGgCCcGUGCGGAGGc -3' miRNA: 3'- -CCGGAACCU-----------UCCU---------------U-GGaCGCGCCUUC- -5' |
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22288 | 5' | -55.1 | NC_005045.1 | + | 20554 | 0.68 | 0.526217 |
Target: 5'- gGGCCUUGGAcGGAugcACUUGCuccuauGUGGGu- -3' miRNA: 3'- -CCGGAACCUuCCU---UGGACG------CGCCUuc -5' |
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22288 | 5' | -55.1 | NC_005045.1 | + | 38828 | 0.69 | 0.479545 |
Target: 5'- cGGCCUUGucaccGGAACCggauaccagcaugGCGCGGGu- -3' miRNA: 3'- -CCGGAACcuu--CCUUGGa------------CGCGCCUuc -5' |
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22288 | 5' | -55.1 | NC_005045.1 | + | 20198 | 0.71 | 0.376498 |
Target: 5'- uGGCCU-GGAcagcagccaccuGGGAcugaccgcccugGCCUGCgcaGCGGAGGa -3' miRNA: 3'- -CCGGAaCCU------------UCCU------------UGGACG---CGCCUUC- -5' |
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22288 | 5' | -55.1 | NC_005045.1 | + | 8979 | 0.72 | 0.317131 |
Target: 5'- cGGCC-UGGGccAGGGACCcccCGUGGAAGu -3' miRNA: 3'- -CCGGaACCU--UCCUUGGac-GCGCCUUC- -5' |
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22288 | 5' | -55.1 | NC_005045.1 | + | 37102 | 1.11 | 0.000489 |
Target: 5'- uGGCCUUGGAAGGAACCUGCGCGGAAGg -3' miRNA: 3'- -CCGGAACCUUCCUUGGACGCGCCUUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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