Results 1 - 15 of 15 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
22289 | 3' | -56.6 | NC_005045.1 | + | 4687 | 0.66 | 0.547283 |
Target: 5'- cGCUGCUacccCGGGcGCCAAGCUgaucaagaagcCGGCCAc -3' miRNA: 3'- -UGACGGc---GCUCaCGGUUUGA-----------GUCGGU- -5' |
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22289 | 3' | -56.6 | NC_005045.1 | + | 4453 | 0.66 | 0.536312 |
Target: 5'- uGCUacGCCGaucaccaGuGUGCCGcGCUUAGCCu -3' miRNA: 3'- -UGA--CGGCg------CuCACGGUuUGAGUCGGu -5' |
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22289 | 3' | -56.6 | NC_005045.1 | + | 41882 | 0.66 | 0.525418 |
Target: 5'- gGCUGCUGuCGAGacUGCCAA----GGCCAa -3' miRNA: 3'- -UGACGGC-GCUC--ACGGUUugagUCGGU- -5' |
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22289 | 3' | -56.6 | NC_005045.1 | + | 34406 | 0.67 | 0.451887 |
Target: 5'- -gUGCCGCGuGaGCaCcAGCUCGGCCc -3' miRNA: 3'- ugACGGCGCuCaCG-GuUUGAGUCGGu -5' |
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22289 | 3' | -56.6 | NC_005045.1 | + | 30832 | 0.68 | 0.431917 |
Target: 5'- -aUGCgGCuuGUGCU--GCUCGGCCAg -3' miRNA: 3'- ugACGgCGcuCACGGuuUGAGUCGGU- -5' |
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22289 | 3' | -56.6 | NC_005045.1 | + | 21579 | 0.69 | 0.356644 |
Target: 5'- --cGUCGuCGAGUGCCGgugcaguGGCaUCGGCCAu -3' miRNA: 3'- ugaCGGC-GCUCACGGU-------UUG-AGUCGGU- -5' |
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22289 | 3' | -56.6 | NC_005045.1 | + | 32522 | 0.69 | 0.340373 |
Target: 5'- --cGUCGCGGGaugGCCGGuauCUCGGCCu -3' miRNA: 3'- ugaCGGCGCUCa--CGGUUu--GAGUCGGu -5' |
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22289 | 3' | -56.6 | NC_005045.1 | + | 16152 | 0.7 | 0.315792 |
Target: 5'- cUUGCCGCaGAGcgggcagaguuUGCCcuGCUCGGCCc -3' miRNA: 3'- uGACGGCG-CUC-----------ACGGuuUGAGUCGGu -5' |
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22289 | 3' | -56.6 | NC_005045.1 | + | 11660 | 0.7 | 0.300163 |
Target: 5'- --aGCuCGuCGAGUGCCGggUaCAGCCAc -3' miRNA: 3'- ugaCG-GC-GCUCACGGUuuGaGUCGGU- -5' |
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22289 | 3' | -56.6 | NC_005045.1 | + | 21851 | 0.71 | 0.285138 |
Target: 5'- --cGCCGCGAG-GCCGA---CAGCCGg -3' miRNA: 3'- ugaCGGCGCUCaCGGUUugaGUCGGU- -5' |
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22289 | 3' | -56.6 | NC_005045.1 | + | 33599 | 0.71 | 0.263723 |
Target: 5'- -gUGCCGUcAG-GCCAAcgcccuGCUCAGCCAu -3' miRNA: 3'- ugACGGCGcUCaCGGUU------UGAGUCGGU- -5' |
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22289 | 3' | -56.6 | NC_005045.1 | + | 38203 | 0.71 | 0.256881 |
Target: 5'- aGCaGaCCGCGAGUGCUGAgcgGCUgGGCCu -3' miRNA: 3'- -UGaC-GGCGCUCACGGUU---UGAgUCGGu -5' |
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22289 | 3' | -56.6 | NC_005045.1 | + | 302 | 0.74 | 0.161579 |
Target: 5'- uGCUGCguCGCGcuGGUGCCAGGCUCGcucGCCu -3' miRNA: 3'- -UGACG--GCGC--UCACGGUUUGAGU---CGGu -5' |
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22289 | 3' | -56.6 | NC_005045.1 | + | 42365 | 0.74 | 0.161579 |
Target: 5'- uGCUGCguCGCGcuGGUGCCAGGCUCGcucGCCu -3' miRNA: 3'- -UGACG--GCGC--UCACGGUUUGAGU---CGGu -5' |
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22289 | 3' | -56.6 | NC_005045.1 | + | 37371 | 1.08 | 0.000518 |
Target: 5'- gACUGCCGCGAGUGCCAAACUCAGCCAc -3' miRNA: 3'- -UGACGGCGCUCACGGUUUGAGUCGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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