miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22289 3' -56.6 NC_005045.1 + 4687 0.66 0.547283
Target:  5'- cGCUGCUacccCGGGcGCCAAGCUgaucaagaagcCGGCCAc -3'
miRNA:   3'- -UGACGGc---GCUCaCGGUUUGA-----------GUCGGU- -5'
22289 3' -56.6 NC_005045.1 + 4453 0.66 0.536312
Target:  5'- uGCUacGCCGaucaccaGuGUGCCGcGCUUAGCCu -3'
miRNA:   3'- -UGA--CGGCg------CuCACGGUuUGAGUCGGu -5'
22289 3' -56.6 NC_005045.1 + 41882 0.66 0.525418
Target:  5'- gGCUGCUGuCGAGacUGCCAA----GGCCAa -3'
miRNA:   3'- -UGACGGC-GCUC--ACGGUUugagUCGGU- -5'
22289 3' -56.6 NC_005045.1 + 34406 0.67 0.451887
Target:  5'- -gUGCCGCGuGaGCaCcAGCUCGGCCc -3'
miRNA:   3'- ugACGGCGCuCaCG-GuUUGAGUCGGu -5'
22289 3' -56.6 NC_005045.1 + 30832 0.68 0.431917
Target:  5'- -aUGCgGCuuGUGCU--GCUCGGCCAg -3'
miRNA:   3'- ugACGgCGcuCACGGuuUGAGUCGGU- -5'
22289 3' -56.6 NC_005045.1 + 21579 0.69 0.356644
Target:  5'- --cGUCGuCGAGUGCCGgugcaguGGCaUCGGCCAu -3'
miRNA:   3'- ugaCGGC-GCUCACGGU-------UUG-AGUCGGU- -5'
22289 3' -56.6 NC_005045.1 + 32522 0.69 0.340373
Target:  5'- --cGUCGCGGGaugGCCGGuauCUCGGCCu -3'
miRNA:   3'- ugaCGGCGCUCa--CGGUUu--GAGUCGGu -5'
22289 3' -56.6 NC_005045.1 + 16152 0.7 0.315792
Target:  5'- cUUGCCGCaGAGcgggcagaguuUGCCcuGCUCGGCCc -3'
miRNA:   3'- uGACGGCG-CUC-----------ACGGuuUGAGUCGGu -5'
22289 3' -56.6 NC_005045.1 + 11660 0.7 0.300163
Target:  5'- --aGCuCGuCGAGUGCCGggUaCAGCCAc -3'
miRNA:   3'- ugaCG-GC-GCUCACGGUuuGaGUCGGU- -5'
22289 3' -56.6 NC_005045.1 + 21851 0.71 0.285138
Target:  5'- --cGCCGCGAG-GCCGA---CAGCCGg -3'
miRNA:   3'- ugaCGGCGCUCaCGGUUugaGUCGGU- -5'
22289 3' -56.6 NC_005045.1 + 33599 0.71 0.263723
Target:  5'- -gUGCCGUcAG-GCCAAcgcccuGCUCAGCCAu -3'
miRNA:   3'- ugACGGCGcUCaCGGUU------UGAGUCGGU- -5'
22289 3' -56.6 NC_005045.1 + 38203 0.71 0.256881
Target:  5'- aGCaGaCCGCGAGUGCUGAgcgGCUgGGCCu -3'
miRNA:   3'- -UGaC-GGCGCUCACGGUU---UGAgUCGGu -5'
22289 3' -56.6 NC_005045.1 + 302 0.74 0.161579
Target:  5'- uGCUGCguCGCGcuGGUGCCAGGCUCGcucGCCu -3'
miRNA:   3'- -UGACG--GCGC--UCACGGUUUGAGU---CGGu -5'
22289 3' -56.6 NC_005045.1 + 42365 0.74 0.161579
Target:  5'- uGCUGCguCGCGcuGGUGCCAGGCUCGcucGCCu -3'
miRNA:   3'- -UGACG--GCGC--UCACGGUUUGAGU---CGGu -5'
22289 3' -56.6 NC_005045.1 + 37371 1.08 0.000518
Target:  5'- gACUGCCGCGAGUGCCAAACUCAGCCAc -3'
miRNA:   3'- -UGACGGCGCUCACGGUUUGAGUCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.