miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2229 3' -52.9 NC_001405.1 + 17872 0.67 0.707647
Target:  5'- aUCAGuggaauaAGGAGGggCAggauACCGCCGCGc -3'
miRNA:   3'- -GGUCuaag---UCCUCUa-GU----UGGCGGCGC- -5'
2229 3' -52.9 NC_001405.1 + 11122 0.67 0.696427
Target:  5'- aCC-GcgUCAGGAGGggCAACauCCGCGg -3'
miRNA:   3'- -GGuCuaAGUCCUCUa-GUUGgcGGCGC- -5'
2229 3' -52.9 NC_001405.1 + 8625 0.67 0.685141
Target:  5'- -aGGGggCAGGGGcacGUCGgcGCCGCgCGCGg -3'
miRNA:   3'- ggUCUaaGUCCUC---UAGU--UGGCG-GCGC- -5'
2229 3' -52.9 NC_001405.1 + 26135 0.67 0.672662
Target:  5'- cCCAGuccggCgAGGAGcUCAacccaauccccccGCCGCCGCa -3'
miRNA:   3'- -GGUCuaa--G-UCCUCuAGU-------------UGGCGGCGc -5'
2229 3' -52.9 NC_001405.1 + 26838 0.68 0.651
Target:  5'- gCAGcagCAGGAGGagGAgCGCUGCGu -3'
miRNA:   3'- gGUCuaaGUCCUCUagUUgGCGGCGC- -5'
2229 3' -52.9 NC_001405.1 + 17263 0.68 0.651
Target:  5'- gCAGAUgccgCGGuGcAGG-CGGCCGCUGCGg -3'
miRNA:   3'- gGUCUAa---GUC-C-UCUaGUUGGCGGCGC- -5'
2229 3' -52.9 NC_001405.1 + 8590 0.68 0.605267
Target:  5'- cCCGGAggUAGGGGGggcUCGGgacCCGCCGgGa -3'
miRNA:   3'- -GGUCUaaGUCCUCU---AGUU---GGCGGCgC- -5'
2229 3' -52.9 NC_001405.1 + 8879 0.69 0.582507
Target:  5'- cUCAGGagacgugCAGGAGAUUuugcgccaGGCCGCCGUc -3'
miRNA:   3'- -GGUCUaa-----GUCCUCUAG--------UUGGCGGCGc -5'
2229 3' -52.9 NC_001405.1 + 11229 0.69 0.537594
Target:  5'- cCCGGcgccgCGGGGGuUCGuaaucaccaucuGCCGCCGCGu -3'
miRNA:   3'- -GGUCuaa--GUCCUCuAGU------------UGGCGGCGC- -5'
2229 3' -52.9 NC_001405.1 + 14286 0.7 0.498229
Target:  5'- gCGGGUcCAGGGGAgcaUCGaagggggaacccagcGCCGCCGCc -3'
miRNA:   3'- gGUCUAaGUCCUCU---AGU---------------UGGCGGCGc -5'
2229 3' -52.9 NC_001405.1 + 16310 0.78 0.178238
Target:  5'- cCCAGGUcCAGGcGAcgagCGGCCGCCGCa -3'
miRNA:   3'- -GGUCUAaGUCCuCUa---GUUGGCGGCGc -5'
2229 3' -52.9 NC_001405.1 + 8763 1.11 0.000876
Target:  5'- gCCAGAUUCAGGAGAUCAACCGCCGCGu -3'
miRNA:   3'- -GGUCUAAGUCCUCUAGUUGGCGGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.