miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22290 3' -62.8 NC_005045.1 + 18590 0.66 0.282589
Target:  5'- gAACCCAa-CCGcUUCACaGGGCGGGGc- -3'
miRNA:   3'- -UUGGGUgcGGC-AGGUG-CCCGUCCCac -5'
22290 3' -62.8 NC_005045.1 + 40343 0.66 0.282589
Target:  5'- cACCCuCGCCGUCaC-CGGcGUGGGGa- -3'
miRNA:   3'- uUGGGuGCGGCAG-GuGCC-CGUCCCac -5'
22290 3' -62.8 NC_005045.1 + 39699 0.66 0.275692
Target:  5'- cAGCUCGuCGCCGccgUCGCcGGCAGGGUc -3'
miRNA:   3'- -UUGGGU-GCGGCa--GGUGcCCGUCCCAc -5'
22290 3' -62.8 NC_005045.1 + 32552 0.66 0.258388
Target:  5'- aGACCCACGCCGaggugccuaagccgcUCCA-GGGCAucgccgccaaGGUGg -3'
miRNA:   3'- -UUGGGUGCGGC---------------AGGUgCCCGUc---------CCAC- -5'
22290 3' -62.8 NC_005045.1 + 40409 0.66 0.255806
Target:  5'- -cCCCACGCCGgUgACGGcG-AGGGUGc -3'
miRNA:   3'- uuGGGUGCGGCaGgUGCC-CgUCCCAC- -5'
22290 3' -62.8 NC_005045.1 + 13029 0.67 0.248815
Target:  5'- gAGCCUgcaucauGCGaCCGUgCCACGGGUgguuGGGGUc -3'
miRNA:   3'- -UUGGG-------UGC-GGCA-GGUGCCCG----UCCCAc -5'
22290 3' -62.8 NC_005045.1 + 27360 0.67 0.243213
Target:  5'- uGGCCCcguCGCCGUCCACGGaCAGc--- -3'
miRNA:   3'- -UUGGGu--GCGGCAGGUGCCcGUCccac -5'
22290 3' -62.8 NC_005045.1 + 41578 0.67 0.219576
Target:  5'- cGCCCuCGCCGcCCA-GGGCAGuGGcUGc -3'
miRNA:   3'- uUGGGuGCGGCaGGUgCCCGUC-CC-AC- -5'
22290 3' -62.8 NC_005045.1 + 16761 0.68 0.20851
Target:  5'- gGACCCugGCCGaccacguugcCCACGGcGcCGGGGa- -3'
miRNA:   3'- -UUGGGugCGGCa---------GGUGCC-C-GUCCCac -5'
22290 3' -62.8 NC_005045.1 + 35833 0.68 0.192815
Target:  5'- uGCCCugGCUgaacugcguGUCCGggaccUGGGCAGGcGUGu -3'
miRNA:   3'- uUGGGugCGG---------CAGGU-----GCCCGUCC-CAC- -5'
22290 3' -62.8 NC_005045.1 + 5234 0.71 0.112519
Target:  5'- uGCCCugGCCGUgugCCagcaGCGGGCAGaGGa- -3'
miRNA:   3'- uUGGGugCGGCA---GG----UGCCCGUC-CCac -5'
22290 3' -62.8 NC_005045.1 + 10213 0.77 0.044468
Target:  5'- -cUCCAgGCCGUCCA-GGGCAGGGa- -3'
miRNA:   3'- uuGGGUgCGGCAGGUgCCCGUCCCac -5'
22290 3' -62.8 NC_005045.1 + 41654 0.91 0.003084
Target:  5'- gAACCaC-CGCCGUCCACGGGCAGGGUGu -3'
miRNA:   3'- -UUGG-GuGCGGCAGGUGCCCGUCCCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.