miRNA display CGI


Results 41 - 52 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22291 3' -56.7 NC_005045.1 + 5750 0.68 0.383842
Target:  5'- --cGGGUAGCGgcCAGCuuGUGCCaGGCc -3'
miRNA:   3'- cuaCUCGUCGU--GUCGggCAUGGgUCG- -5'
22291 3' -56.7 NC_005045.1 + 5153 0.66 0.513522
Target:  5'- --cGAGCAcaucaACGGCaCCGUGCgUAGCg -3'
miRNA:   3'- cuaCUCGUcg---UGUCG-GGCAUGgGUCG- -5'
22291 3' -56.7 NC_005045.1 + 41377 0.66 0.502852
Target:  5'- --cGAGCAGUACcucgcuGgCCGUAacaCCGGCc -3'
miRNA:   3'- cuaCUCGUCGUGu-----CgGGCAUg--GGUCG- -5'
22291 3' -56.7 NC_005045.1 + 23245 0.67 0.48808
Target:  5'- cGGUGAuccaGCAGCAggcuccggucCAGCCCGgucaggugggugcGCCgCAGCa -3'
miRNA:   3'- -CUACU----CGUCGU----------GUCGGGCa------------UGG-GUCG- -5'
22291 3' -56.7 NC_005045.1 + 13834 0.67 0.461208
Target:  5'- ---cGGCAGCGCGGCagcacugGUGgCCAGCa -3'
miRNA:   3'- cuacUCGUCGUGUCGgg-----CAUgGGUCG- -5'
22291 3' -56.7 NC_005045.1 + 10390 0.67 0.455117
Target:  5'- cGAUGAGCGccGCGCcauGGUCCGcagccucauggaagaUugCCGGCg -3'
miRNA:   3'- -CUACUCGU--CGUG---UCGGGC---------------AugGGUCG- -5'
22291 3' -56.7 NC_005045.1 + 40517 0.68 0.411845
Target:  5'- -cUGcGCGGCGCAGCCCuggcggcUGCCCucGCc -3'
miRNA:   3'- cuACuCGUCGUGUCGGGc------AUGGGu-CG- -5'
22291 3' -56.7 NC_005045.1 + 42215 0.68 0.402371
Target:  5'- cGGUGGcGUGGCugcccauCGGCUCaUACCCAGCg -3'
miRNA:   3'- -CUACU-CGUCGu------GUCGGGcAUGGGUCG- -5'
22291 3' -56.7 NC_005045.1 + 25787 0.68 0.402371
Target:  5'- cGGUG-GCGGCGCAGCuuGaggACCUgAGUa -3'
miRNA:   3'- -CUACuCGUCGUGUCGggCa--UGGG-UCG- -5'
22291 3' -56.7 NC_005045.1 + 152 0.68 0.402371
Target:  5'- cGGUGGcGUGGCugcccauCGGCUCaUACCCAGCg -3'
miRNA:   3'- -CUACU-CGUCGu------GUCGGGcAUGGGUCG- -5'
22291 3' -56.7 NC_005045.1 + 23033 0.68 0.401431
Target:  5'- gGcgGAGCAGCagcgucaGCAGgCCGcgcagGCCCAGg -3'
miRNA:   3'- -CuaCUCGUCG-------UGUCgGGCa----UGGGUCg -5'
22291 3' -56.7 NC_005045.1 + 27796 0.76 0.125501
Target:  5'- cGUGuauCAGCuACAGCCCGUGgCCGGCg -3'
miRNA:   3'- cUACuc-GUCG-UGUCGGGCAUgGGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.