miRNA display CGI


Results 41 - 51 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22292 3' -55 NC_005045.1 + 33378 0.71 0.366735
Target:  5'- gGCGCAcgG-CGCCUCC-UGGGCcGUCu -3'
miRNA:   3'- -UGCGUuaUgGCGGAGGuAUCCGuCGG- -5'
22292 3' -55 NC_005045.1 + 33666 0.7 0.413104
Target:  5'- cGCGUAGacccgaaccUGCCGCCgaCCAUcaAGGCccuGGCCg -3'
miRNA:   3'- -UGCGUU---------AUGGCGGa-GGUA--UCCG---UCGG- -5'
22292 3' -55 NC_005045.1 + 33712 0.73 0.277911
Target:  5'- uACGCGGa--CGCUaCCGUAGGCAGUCc -3'
miRNA:   3'- -UGCGUUaugGCGGaGGUAUCCGUCGG- -5'
22292 3' -55 NC_005045.1 + 36010 0.66 0.64977
Target:  5'- gGCGCAG---CGCCUCauu-GGCGGCg -3'
miRNA:   3'- -UGCGUUaugGCGGAGguauCCGUCGg -5'
22292 3' -55 NC_005045.1 + 38458 0.7 0.403543
Target:  5'- uGCGCc-UGCCGCauCUCCucgcggAGGCGGUCg -3'
miRNA:   3'- -UGCGuuAUGGCG--GAGGua----UCCGUCGG- -5'
22292 3' -55 NC_005045.1 + 38556 0.71 0.340686
Target:  5'- gGCGUcAUGCUGCCUCCuuaGUGGGUguaaGGCg -3'
miRNA:   3'- -UGCGuUAUGGCGGAGG---UAUCCG----UCGg -5'
22292 3' -55 NC_005045.1 + 39370 0.65 0.661074
Target:  5'- cUGCGGgucaGCCGCCcagCCAc-GGguGCCg -3'
miRNA:   3'- uGCGUUa---UGGCGGa--GGUauCCguCGG- -5'
22292 3' -55 NC_005045.1 + 40310 0.7 0.384848
Target:  5'- gAUGCucGAUACCGCCaCCG-AGGCGGgCa -3'
miRNA:   3'- -UGCG--UUAUGGCGGaGGUaUCCGUCgG- -5'
22292 3' -55 NC_005045.1 + 40960 0.65 0.661074
Target:  5'- uCGCAAUACuCGUCcuugCUGU-GGUAGCCc -3'
miRNA:   3'- uGCGUUAUG-GCGGa---GGUAuCCGUCGG- -5'
22292 3' -55 NC_005045.1 + 41658 0.67 0.570761
Target:  5'- cACGgAAccACCGCCgUCCAcGGGCAGg- -3'
miRNA:   3'- -UGCgUUa-UGGCGG-AGGUaUCCGUCgg -5'
22292 3' -55 NC_005045.1 + 42299 0.67 0.548522
Target:  5'- cCGCAGgg-CGCUggguaugagCCgAUGGGCAGCCa -3'
miRNA:   3'- uGCGUUaugGCGGa--------GG-UAUCCGUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.