miRNA display CGI


Results 41 - 51 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22292 3' -55 NC_005045.1 + 10547 0.88 0.022579
Target:  5'- aGCGUAGUACCGCCUCCAUAGaacggcaggauuguGCGGCUa -3'
miRNA:   3'- -UGCGUUAUGGCGGAGGUAUC--------------CGUCGG- -5'
22292 3' -55 NC_005045.1 + 9882 0.74 0.237141
Target:  5'- gGCGCGG-GCCGCCUUCG-GGGUcgGGCCa -3'
miRNA:   3'- -UGCGUUaUGGCGGAGGUaUCCG--UCGG- -5'
22292 3' -55 NC_005045.1 + 32419 0.73 0.256865
Target:  5'- cGCGUGcgGCgGCCUCCuc-GGCGGUCa -3'
miRNA:   3'- -UGCGUuaUGgCGGAGGuauCCGUCGG- -5'
22292 3' -55 NC_005045.1 + 33712 0.73 0.277911
Target:  5'- uACGCGGa--CGCUaCCGUAGGCAGUCc -3'
miRNA:   3'- -UGCGUUaugGCGGaGGUAUCCGUCGG- -5'
22292 3' -55 NC_005045.1 + 38556 0.71 0.340686
Target:  5'- gGCGUcAUGCUGCCUCCuuaGUGGGUguaaGGCg -3'
miRNA:   3'- -UGCGuUAUGGCGGAGG---UAUCCG----UCGg -5'
22292 3' -55 NC_005045.1 + 15239 0.71 0.340686
Target:  5'- cGCGUAGUgGCCGCagccaCGUAGGCggGGCCg -3'
miRNA:   3'- -UGCGUUA-UGGCGgag--GUAUCCG--UCGG- -5'
22292 3' -55 NC_005045.1 + 38458 0.7 0.403543
Target:  5'- uGCGCc-UGCCGCauCUCCucgcggAGGCGGUCg -3'
miRNA:   3'- -UGCGuuAUGGCG--GAGGua----UCCGUCGG- -5'
22292 3' -55 NC_005045.1 + 7717 0.69 0.442604
Target:  5'- aGC-CGAUGCUGCCUUucgcuguacagCAgcGGCAGCCc -3'
miRNA:   3'- -UGcGUUAUGGCGGAG-----------GUauCCGUCGG- -5'
22292 3' -55 NC_005045.1 + 28379 0.68 0.48371
Target:  5'- gGCGgAcAUGCCGCCagcggCCAauaguGGUAGCCa -3'
miRNA:   3'- -UGCgU-UAUGGCGGa----GGUau---CCGUCGG- -5'
22292 3' -55 NC_005045.1 + 4138 0.68 0.50494
Target:  5'- gAUGCAGUAgcaggCGCCUgCCAgcaggccgAGGCAGCa -3'
miRNA:   3'- -UGCGUUAUg----GCGGA-GGUa-------UCCGUCGg -5'
22292 3' -55 NC_005045.1 + 39370 0.65 0.661074
Target:  5'- cUGCGGgucaGCCGCCcagCCAc-GGguGCCg -3'
miRNA:   3'- uGCGUUa---UGGCGGa--GGUauCCguCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.